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研究生: 謝昀儒
Hsieh, Yun-Ju
論文名稱: Topological Data Analysis with Combinatorial Laplacian for Data Clustering
Topological Data Analysis with Combinatorial Laplacian for Data Clustering
指導教授: 樂美亨
Yueh, Mei-Heng
口試委員: 黃聰明
Huang, Tsung-Ming
林文偉
Lin, Wen-Wei
口試日期: 2021/07/05
學位類別: 碩士
Master
系所名稱: 數學系
Department of Mathematics
論文出版年: 2021
畢業學年度: 109
語文別: 英文
論文頁數: 42
英文關鍵詞: Topological data analysis, Homology group, Laplacian matrix, Persistent homology
研究方法: 紮根理論法比較研究
DOI URL: http://doi.org/10.6345/NTNU202100727
論文種類: 學術論文
相關次數: 點閱:142下載:14
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  • This thesis attempts to combine machine learning and topological data analysis (TDA). We exam the machine that only learned the original data without interruption to face various testing data under linear transformation by adding Betti number as an additional feature. Our experiments are based on the theory of homology group by constructing simplicial complexes of images and the discrete version of the Hodge theorem with higher-order Laplacian matrices. This approach performs well and represents the importance concerning topological structure of the image itself. We believe that TDA is a good supporter to help machine learning models dealing with more complicated data rather than pouring more and more different cases for training. In the future, we would pay more attention to the application and the theory of TDA combined with diverse models.

    1. Introduction 1 2. Background 3 2.1 Homology theory 3 2.2 Graph Laplacian 6 2.3 Persistent homology 11 3. Numerical experiment 15 3.1 Experiments 15 3.2 Sampling of training data 21 3.3 Conclusion 23 3.4 Future work 24 Bibliography 26 Appendix 29

    [1] GOLDBERG, Timothy E. Combinatorial Laplacians of simplicial complexes. Senior Thesis, Bard College, 2002.

    [2] WANG, Rui; NGUYEN, Duc Duy; WEI, Guo-Wei. Persistent spectral graph. International journal for numerical methods in biomedical engineering, 2020, 36.9: e3376.

    [3] GUILLEMIN, Victor; HAINE, Peter. Differential Forms. World Scientific, 2019.

    [4] Polterovich, L., Rosen, D., Samvelyan, K., Zhang, J. (2020). Topological Persistence in Geometry and Analysis (Vol. 74). American Mathematical Soc..

    [5] ZOMORODIAN, Afra; CARLSSON, Gunnar. Computing persistent homology. Discrete Computational Geometry, 2005, 33.2: 249-274.

    [6] Lei, N., Su, K., Cui, L., Yau, S. T., Gu, X. D. (2019). A geometric view of optimal transportation and generative model. Computer Aided Geometric Design, 68, 1-21.

    [7] GHRIST, Robert. Barcodes: the persistent topology of data. Bulletin of the American Mathematical Society, 2008, 45.1: 61-75.

    [8] Cattani, Eduardo, Fouad El Zein, and Phillip A. Griffiths. Hodge Theory (MN-49). Princeton University Press, 2014.

    [9] IVANCEVIC, Vladimir G.; IVANCEVIC, Tijana T. Undergraduate lecture notes in De Rham-Hodge theory. arXiv preprint arXiv:0807.4991,2008.

    [10] VON LUXBURG, Ulrike. A tutorial on spectral clustering. Statistics and computing, 2007, 17.4: 395-416.

    [11] HU, Chuan-Shen; CHUNG, Yu-Min. A Sheaf and Topology Approach to Generating Local Branch Numbers in Digital Images. arXiv preprintarXiv:2011.13580, 2020.

    [12] HU, Chuan-Shen. A Brief Note for Sheaf Structures on Posets. arXiv preprint arXiv:2010.09651, 2020.

    [13] GALLIER, Jean; QUAINTANCE, Jocelyn. A gentle introduction to homology, cohomology, and sheaf cohomology. Preprint, 2016.

    [14] Lei, N., An, D., Guo, Y., Su, K., Liu, S., Luo, Z., ... Gu, X. (2020). A geometric understanding of deep learning. Engineering, 6(3), 361-374.

    [15] ARJOVSKY, Martin; CHINTALA, Soumith; BOTTOU, Léon. Wasser-stein generative adversarial networks. In: International conference on machine learning. PMLR, 2017. p. 214-223.

    [16] Hu, Chuan-Shen, and Yu-Min Chung. "On the Conditions of Absorption Property for Morphological Opening and Closing." arXiv preprintarXiv:2012.13132 (2020).

    [17] NG, Andrew; JORDAN, Michael; WEISS, Yair. On spectral clustering: Analysis and an algorithm. Advances in neural information processing systems, 2001, 14: 849-856.

    [18] LeCun, Yann and Cortes, Corinna. "MNIST handwritten digit database." (2010): .

    [19] CURRY, Justin Michael. Topological data analysis and cosheaves. Japan Journal of Industrial and Applied Mathematics, 2015, 32.2: 333-371.

    [20] Winters-Hilt, S., Merat, S. (2007, November). SVM clustering. In BMC bioinformatics (Vol. 8, No. 7, pp. 1-12). BioMed Central.

    [21] Baas, N. A., Carlsson, G. E., Quick, G., Szymik, M., Thaule, M. (2020).Topological Data Analysis. Springer International Publishing.

    [22] Bott, Raoul, and Loring W. Tu. Differential forms in algebraic topology. Vol. 82. Springer Science Business Media, 2013.

    [23] ADAMS, Henry; TAUSZ, Andrew. Javaplex tutorial. Google Scholar,2011.

    [24] HARTIGAN, John A.; WONG, Manchek A. AK-means clustering algorithm. Journal of the Royal Statistical Society: Series C (Applied Statistics), 1979, 28.1: 100-108.

    [25] MUNCH, Elizabeth. Applications of persistent homology to time varying systems. Unpublished doctoral dissertation) Durham, NC: Duke University.[Google Scholar], 2013.

    [26] Sheehy, Donald R., and Siddharth Sheth. "Sketching Persistence Diagrams." arXiv preprint arXiv:2012.01967 (2020).

    [27] MACKAY, David JC; MAC KAY, David JC. Information theory, inference and learning algorithms. Cambridge university press, 2003.

    [28] Greenberg, Marvin J. Algebraic topology: a first course. CRC Press,2018.

    [29] Benson-Putnins, D. A. V. I. D., Bonfardin, M., Magnoni, M. E., Martin,D. (2011). Spectral clustering and visualization: a novel clustering of fisher's iris data set. SIAM Undergraduate Research Online, 4, 1-15.

    [30] YU, Yan-Lin. Combinatorial Gauss-Bonnet-Chern Formula. Topology,1983, 22.2: 153-163.

    [31] Cohen, G., Afshar, S., Tapson, J., Van Schaik, A. (2017, May). EMNIST: Extending MNIST to handwritten letters. In 2017 International Joint Conference on Neural Networks (IJCNN) (pp. 2921-2926). IEEE.

    [32] XIAO, Han; RASUL, Kashif; VOLLGRAF, Roland. Fashionmnist: a novel image dataset for benchmarking machine learning algorithms. arXiv preprint arXiv:1708.07747, 2017.

    [33] ALTMAN, Naomi S. An introduction to kernel and nearest-neighbor nonparametric regression. The American Statistician, 1992, 46.3: 175-185.

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