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研究生: 陳伯飛
Chen, Bo-Fei
論文名稱: 尼泊爾埋葬蟲的社會演化與生殖適應的基因體研究
Social evolution and genomic investigation of breeding adaptation in burying beetles
指導教授: 沈聖峰
Shen, Sheng-Feng
蔡怡陞
Tsai, IshengJason
學位類別: 博士
Doctor
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2019
畢業學年度: 107
語文別: 英文
論文頁數: 137
中文關鍵詞: social evolutioncooperative behaviorcomparative genomicsseasonal breedercontinuous breederburying beetle
英文關鍵詞: social evolution, cooperative behavior, comparative genomics, seasonal breeder, continuous breeder, burying beetle
DOI URL: http://doi.org/10.6345/NTNU201900769
論文種類: 學術論文
相關次數: 點閱:93下載:3
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  • Competition shapes the evolution of life and determines how organisms live now. Carcasses are nutritious but unpredictable and transient resources that drive intense competition among scavengers and microbiomes. Burying beetles (Coleoptera: Silphidae: Nicrophorus) are one of the unique scavenging insects which use small vertebrate carcasses as the sole resources to reproduce. To compete against the major interspecific competitor, blowflies, they formed cooperative groups on carcasses. This study used a series of field and laboratory experiments to clarify the mechanism of group formation in burying beetles and found that interspecific competition drove Nicrophorus nepalensis to use a sulfur-containing organic volatile compound, dimethyl disulfide (DMDS) as the cue to indicate interspecific competition and form social groups on carcasses. On the other hand, the interspecific competition also drove N. nepalensis to evolve two breeding types, i.e., continuous breeding (CB) and seasonal breeding (SB), among populations. To understand the transition in the molecular mechanism between two breeding types, I performed the genomic comparison among N. nepalensis and 14 Hexapoda species and the transcriptomic comparisons between two N. nepalensis populations. The results showed the insects of two breeding types had convergent evolution at gene levels, respectively, and N. nepalensis shared breeding-type specific genes with both breeding types. These two studies provide evidence to demonstrate how N. nepalensis adapt to interspecific competition in terms of cooperative behavior and also adjusting breeding seasons. When the pressure of interspecific competition increases, N. nepalensis shifts from intraspecific competition to cooperation to compete with interspecific competitors. Because N. nepalensis has both breeding-type specific gene features in its genome, N. nepalensis can adjust the breeding season to avoid interspecific competitors when the competitive pressure is too high. Differentiation in the length of breeding seasons implies N. nepalensis has local adaptation among populations. In future work, the study would be focused on the molecular evolution among populations using genomic data in order to further understand the local adaptation and its driving forces in N. nepalensis.

    Acknowledgement i Abstract iii Chapter 1 – Introduction 1 Evolution driven by competition 1 Behavioral mechanisms of group formation 2 Genomic and transcriptomic comparisons in breeding regulations 3 References 5 Chapter 2 – A chemically-triggered transition from conflict to cooperation in burying beetles 9 Abstract 9 Introduction 11 Results 13 Group size, social investment and conflict along the environmental gradient 13 Cooperation triggered by interspecific competition 14 A sulfur-containing organic compound as the cue of interspecific competition 15 Dominance hierarchy and body temperature among group members 17 Discussion 20 Materials and methods 22 References 29 Chapter 3 – The genomic and transcriptomic investigations of seasonal and continuous breeding adaptations in burying beetles 46 Abstract 46 Introduction 47 Results 49 Assembly, gene annotation, and genome characterization of the N. nepalensis genome 49 Convergent evolution at gene levels within CB and SB insects 50 N. nepalensis shared genetic features with both breeding types 52 Gene-expression changes between seasonal and continuous breeding N. nepalensis populations 53 Genes and their function correlated with sexual maturation and developmental stages 55 Breeding-type-specific orthologues or PDEGs and circadian clock genes in the regulation of continuous and seasonal breeding 57 Discussion 59 Materials and methods 61 References 67 Chapter 4 – Conclusion 135 References 137

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    Chapter 4
    1 Chen, B.-F. et al. A chemically-triggered transition from conflict to cooperation in burying beetles. bioRxiv, 389163 (2018).
    2 Sun, S.-J. et al. Climate-mediated cooperation promotes niche expansion in burying beetles. eLife 3 (2014).

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