簡易檢索 / 詳目顯示

研究生: 林秀珠
Lin Shio-Zhu
論文名稱: 第IIIB型黏多醣儲積症之分子遺傳學研究
Molecular Genetic Study of Mucopolysaccharidosis Type IIIB
指導教授: 李桂楨
Lee, Guey-Jen
學位類別: 碩士
Master
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2000
畢業學年度: 88
語文別: 中文
論文頁數: 94
中文關鍵詞: NAGLU黏多醣基因突變
英文關鍵詞: NAGLU, mucopolysaccharidosis, mutation
論文種類: 學術論文
相關次數: 點閱:248下載:1
分享至:
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報
  • α-N-Acetylglucosaminidase (NAGLU)為一種溶小體酵素(lysosomal eneyme),主要代謝heparan sulfate黏多醣,當酵素活性缺失或顯著降低,將導致體染色體隱性遺傳的第三B型黏多醣儲積症(簡稱MPS IIIB)。NAGLU基因已被分離且定序。本論文主要在探討臺灣MPS IIIB患者的分子致因。聚合酵素鏈反應(PCR)放大包含患者NAGLU基因各表現子片段,經單股核酸構形多型性(SSCP)分析、異偶合(heteroduplex)分析及DNA定序,以檢視患者的基因突變。結果發現患者773為複異型合子的突變,其表現子3上第220個胺基酸密碼的第三個位置缺失核甘酸C (660delC突變),表現子6上第565個胺基酸密碼發生CGG→TGG的改變(R565W突變)。對偶基因專一的寡核甘酸引子(ASO)雜合的檢測試驗顯示,患者的660delC突變係遺傳自父親,R565W突變則遺傳自母親。患者1146為同型合子的突變,其表現子6上第626個胺基酸密碼發生CGA→TGA的改變(R626X突變)。DdeI切割的檢測試驗顯示患者的父親為R626X突變的異型合子,但母親並無此突變。患者1362、1363兄弟皆為同型合子的突變,其表現子2上第130個胺基酸密碼發生CGC→TGC的改變(R130C突變)。KpnI切割的檢測試驗顯示患者的母親為R130C突變的異型合子。患者1377亦為同型合子的突變,其表現子2上第154個胺基酸密碼發生ATA→AGA的改變(I154R突變)。誤配(mismatch)引子的PCR及HinfI切割的檢測試驗顯示,患者的父母親皆為I154R突變的異型合子。在轉移的COS-7細胞中含660delC、R565W、R626X、Y309C、G412E突變的NAGLU cDNA重組質體,僅表現微量的NAGLU酵素活性(野生型的0.0~3.9),雖然NAGLU mRNA的表現量並未降低。

    α-N-Acetylglucosaminidase (NAGLU) is one of the lysosomal enzymes involved in the stepwise degradation of glycosaminoglycans heparan sulfate. Loss or marked reduction of NAGLU activity results in the autosomal recessive mucopolysaccharidosis type IIIB (MPS IIIB) disease. The purpose of this study was to investigate the molecular lesions of Chinese patients with MPS IIIB. The coding sequences of the NAGLU gene were amplified and examined by single strand conformation polymorphism, heteroduplex, and DNA sequence analyses. Patient 773 has heterozygous mutations; one NAGLU allele has R565W (C-T transition in codon 565) and the other NAGLU allele has 660delC (deletion of nucleotide C at cDNA 660). By allele specific oligonucleotide hybridization analysis, mutation R565W was maternally inherited whereas mutation 660delC paternally inherited. Patient 1146 is homozygous for mutation R626X (C-T transition in codon 626). By DdeI restriction analysis, the mutation was only found in 1146's father. Patients 1362 and 1363 are homozygous for mutation R130C (C-T transition in codon 130). By KpnI restriction analysis, the mutation also appears in their mother. Patient 1377 is homozygous for mutation I154R (T-G transversion in codon 154). By PCR with mismatch primer and HinfI restriction analysis, the mutation was inherited from both parents. In transfected COS-7 cells, NAGLU cDNA containing 60delC, R565W, R626X, Y309C or G412E mutation caused significant reduction in enzyme activity (0.0~3.9 of normal activity), although it did not cause significant reduction in NAGLU mRNA levels.

    目錄……………………………...………………………………I 中文摘要…………………….………………………………….V 英文摘要…………………………………………………….VII 圖次表………………………………………………………….IX 壹、緒論……………………………………………………...…1 貳、研究材料與方法…………………………………………….9 一、 MPS IIIB 患者血液樣品………………………………….9 二、 基因組DNA的萃取…………………………………….…9 三、 聚合酵素鏈反應(PCR)……………………………………..10 四、 異偶合(heteroduplex)分析…………………………….…10 五、 單股核酸構形多型性(SSCP)分析…………………….…11 六、 SSCP及heteroduplex異常片段之選殖………………….12 (一) 自洋菜膠中純化DNA片段………………….…….12 (二) 接合反應(ligation)………………………………….13 (三) 轉形勝任細胞(competent cell)之製備…….……….13 (四) 細菌的轉形作用(transformation)………….………14 (五) 質體DNA的小量製備……………………………..14 (六) 質體DNA的大量製備及純化…………………….15 七、 DNA定序………………………………………………...17 八、 發展突變基因的檢測試驗………………………………17 (一) 660delC及R565W的ASO雜合檢測…………..17 1、 探針的製作…………………………………………..17 2、 DNA的轉漬………………………………………….18 3、 雜合反應……………………………………………..18 4、 呈色反應……………………………………………..19 (二) R626X突變的DdeI限制酵素切割分析…………...19 (三) R130C突變的KpnI限制酵素切割分析…………...20 (四) I154R突變的HinfI限制酵素切割分析……….20 九、 纖維母細胞total RNA的抽取……………………….….20 十、 纖維母細胞mRNA的抽取………………………………21 十一、 反轉錄酵素-聚合酵素鏈反應(RT-PCR)…………...22 十二、 野生型cDNA重組質體的構築與確認………………23 十三、 突變cDNA重組質體的構築與確…………………...24 (一) pcDNA3-NAGLU/660delC重組質體……………...24 (二) pcDNA3-NAGLU/R565W重組質體………………24 (三) pcDNA3-NAGLU/R626X重組質體……………….25 (四) pcDNA3-NAGLU/Y309C重組質體……………….25 (五) pcDNA3-NAGLU/G412E重組質體……………….26 十四、重組質體的轉移………………………………………..26 十五、重組質體轉移及複製效率之測定……………………...27 十六、北方轉漬分析轉移細胞內的NAGLU mRNA…………28 (一) 以DIG標記探針的製備…………………..….…….28 (二) RNA的轉漬………………………………..….……29 (三) 雜合反應…………………...………………...……..30 十七、轉移細胞的NAGLU酵素活性之檢測……………...….30 (一) 細胞液(cell lysate)的製備……………………….....30 (二) 細胞總蛋白的定量………………………………....31 (三) NAGLU酵素動力學…………………………….....31 (四) NAGLU酵素活性的測定………………………….32 十八、介入子多型性的族群分析…………………………...…33 (一) g2739G→C……………………………………......33 (二) g2304insA…………………………………...……...33 參、結果………………………………………………………34 一、 MPS IIIB患者NAGLU基因的突變分析……………….34 (一) 患者773……………………………………………34 (二) 患者1146…………………………………………...35 (三) 患者1362、1363…………………………………….35 (四) 患者1377…………………………………………..36 (五) 患者155……………………………………………36 二、 pcDNA3-NAGLU野生型重組質體的建立……………..37 三、 突變對NAGLU酵素活性的影響……………………….37 (一) 突變的cDNA重組質體的構築及確認……………37 1、 pcDNA3-NAGLU/660delC…………………………37 2、 pcDNA3-NAGLU/R565W…………………………38 3、 pcDNA3-NAGLU/R626X……………………………38 4、 pcDNA3-NAGLU/Y309C……………………………38 5、 pcDNA3-NAGLU/G412E……………………………39 (二) NAGLU cDNA重組質體轉移效率的測定……….39 1、 LipofectAMINE 2000用量測試結果………………39 2、 轉移效率的測定……………………………………..40 (三) 突變對NAGLU mRNA表現量的影響……………40 (四) NAGLU動力學分析……………………………….40 (五) 突變對NAGLU酵素活性的影響………………….41 四、 族群介入子多型性分析…………………………………41 (一) g2739G→C…………………………………………41 (二) g2304insA…………………………………………..42 肆、討論………………………………………………………...43 伍、參考文獻…………………………………………………...50 圖一~圖二十二………………………………………………...59 表一~表十一…………………………………………………...84

    Aronovich, E. L., Zhao, H. G., Neufeld, E. F., and Whitley, C. B. (1996) Mutation analysis in Sanfilippo syndrome type B by automated sequencing of the NAGLU coding region. Am. J. Hum. Genet. Suppl. 59:A246.
    Baserga, S. J. and Benz E. J. Jr. (1988) Nonsense mutations in the human -globin gene affect mRNA metabolism. Proc. Natl. Acad. Sci. USA 85:2056-2060.
    Beck, M. (1996) Incidence and clinical variability of Sanfilippo disease in Germany. In“MPS Symposium. ” (4th) Wollongong, Australia.
    Beesley, C. E., Young, E. P., Vellodi, A., and Winchester, B. G. (1998) Identification of 12 novel mutations in the -N-acetylglucosaminidase gene in 14 patients with Sanfilippo syndrome type B (mucopolysaccharidosis type IIIB). J. Med. Genet. 35:910-914.
    Belgrader, P., Cheng. J., Zhou, X., Stephenson L. S., and Maquat L. E. (1994) Mammalian nonsense codons can be cis effectors of nuclear mRNA half-life. Mol. Cell. Biol. 14:8219-8228.
    Beratis, N. G., Sklower, S. L., Wilbur, L., and Matalon, R (1986) Sanfilippo disease in Greece. Clin. Genet. 29:129-132.
    Bunge, S., Kleijer, W. J., Steglich, C., Beck, M.,Schwinger E., and Gal, A. (1995) Mucopolysaccharidosis type : identification of 13 novel mutation of the -L-iduronidase gene. Hum. Mutat. 6:91-94.
    Bunge, S., Ince H., and Steglich C. (1997a) Identification of 16 sulfamidase gene mutations including the common R74C in patirnts with mucopolysaccharidosis type IIIA (Sanfilippo A) Hum. Mutat. 10:479-485.
    Bunge, S., Kleijer, W. J., and Tylki-Szymanska A. (1997b) Identification of 31 novel mutations in the N-acetylgalactosamine-6-sulfatase gene reveals excessive allelic heterogeneity among patients with Morquio A syndrome. Hum. Mutat. 10:223-232.
    Bunge, S., Knigge, A., Steglich, C., Kleijer, W. J., van Diggelen, O. P., Beck, M., and Gal, A. (1999) Mucopolysaccharidosis type IIIB (Sanfilippo B): identification of 18 novel -N-acetylglucosaminidase gene mutations. J. Med. Genet. 36:28-31.
    Chomczynski, P. and Sacci, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 163:156-159.
    Chuang, S.C., Hwu, W. L., Wu, C. C., Hou, J. W., and Wang, T. R. (1996) Diagonosis of Mucopolysaccharidosis Type B. Acta. Paed. Sin. 37:320-323.
    Cleary, M. A. and Wraith, J. E. (1993) Management of mucopolysaccharidosis type III. Arch. Dis. Child. 69:403-406.
    Cooper, D., Krawczak, M., and Antonarakis, S. E. M. (1995) The nature and mechanisms of human gene mutation. In “The metabolic and molecular bases of inherited disease.” Ed. by Scriver, C. R., Beaudet, A. L., Sly, W. S., and Valle, D., McGraw-Hill, New York, pp. 259-292.
    Di Natale, P., Salvatore, D., Daniele, A., and Bonatti, S. (1985) Biosynthesis of alpha-N-acetylglucosaminidase in cultured human kidney carcinoma cells. Enzyme 33:75-83.
    Fairbairn, L. J., Lashford, L. S., Spooncer, E., McDermott, R. H., Lebens, G., Arrand, J. E., Arrand, J. R., Bellantuono, I., Holt, R., Hatton, C. E., Cooper, A., Besley, G. T. N., Wraith, J. E., Anson, D. S., Hopwood, J. J., and Dexter, T. M. (1996) Long-term in vitro correction of -L-iduronidase deficiency (Hurler syndrome) in human bone marrow. Proc. Natl. Acad. Sci. USA 93:2125-2130.
    Gyapay, G., Morissette, J., Vignal, A., Dib, C., Millasseau, P., Marc, S., Bernardi, G., Lathrop, M., and Weissenbach, J. (1994)
    The 1993-94 Genethon human genetic linkage map. Nat. Genet. 7:246-339.
    Hirt, B. (1967) Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26:365-369.
    Hopwood, J. J. and Morris, C. P. (1990) The mucopolysaccharidoses: molecular genetics and treatment. Mol. Biol. Med. 7:381-404.
    Hopwood, J. J., Vellodi, A., Scott, H. S., Morris, C. P., Litjens, T., Clements, P. R., Brooks, D. A., Cooper, A., and Wraith, J. E. (1993) Long-term clinical progress in bone marrow transplanted mucopolysaccharidosis type I patients with a defined genotype. J. Inher. Metab. Dis. 16:1024-1033.
    Huang, M. M., Wong, A., Yu, X., Kakkis, E., and Kohn, D. B. (1997) Retrovirus-mediated transfer of the human hematopoietic progenitor cells leads to correction in trans of Hurler fibroblasts. Gene Ther. 4:1150-1159.
    Kadowaki, T., Kadowaki, H., and Taylor S. I. (1990) A nonsense mutation causing decreased levels of insulin receptor mRNA: detection by a simplified technique for direct sequencing on genomic DNA amplified by the polymerase chain reaction. Proc. Natl. Acad. Sci. USA 87:658-662.
    Kakkis, E. D., McEntee, M. F., Schmidtchen, A., Neufeld, E. F., Ward, D. A., Gompf, R. E., Kania, S., Bedolla, C., Chien, S.-L., and Shull, R. M. (1996) Long-term and high-dose trails of enzyme replacement therapy in the canine model of mucopolysaccharidosis I. Biochem. Mol. Med. 58:156-167.
    Kornfeld S. (1986) Trafficking of lysosomal enzymes in normal and disease states. J. Clin. Invest. 77:1-6.
    Knott, T. J., Wallis, S. C., Pease, R. J., Powell, L. M., and Scott, J. (1986) A hypervariable region 3' to the human apolipoprotein B gene. Nucleic Acids Res. 14:9215-9216.
    Menon, K. P. and Neufeld E. F. (1994) Evidence for degradation of mRNA encoding -L-iduronidase in Hurler fibroblasts with premature termination alleles. Cell. Mol. Biol. 40:999-1005.
    Michelakakis, H., Dimitriou, E., Tsagaraki, S., Giouroukos, S., Schulpis, K., and Bartsocas, C. S. (1995) Lysosomal storage disease in Greece. Genet. Couns. 6:43-47.
    Nelson, J. (1996) Incidence of the mucopolysaccharidosis in Northern Ireland. In“MPS Symposium. ” (4th) Wollongong, Australia.
    Neufeld, E. F. and Muenzer, J. (1995) The mucopolysaccharidoses. In “The metabolic basis of inherited diseases.” Ed. by Scriver, C. R., Beaudet, A. L., Sly, W. S. and Valle, D. (7th ed.), McGraw-Hill, New York, pp. 2465-2494.
    Pfeffer, S. R. (1991) Targeting of proteins to the lysosome. Curr. Top. Microbiol. Immunol. 170:43-63.
    Roden, L. (1980) Structure and metabolism of connective tissue proteoglycans. In “The biochemistry of glycoprotein and proteoglycans.” Ed. by Lennarz, W. J., Plenum Press, New York, pp. 267-371.
    Salvatore, D., Bonatti, S., and Di Natale, P. (1982) Biosynthesis of -N-acetylglucosaminadase in human kidney cells. Biol. Cell 45:212.
    Salvatore, D., Bonatti, S., and Di Natale, P. (1984) Lysosomal -N-acetylglucosaminidase: purification and characterization of the human urinary enzyme. Bull. Mol. Biol. Med. 9:111-121.
    Sambrook, J., Fritsch, E.F., and Maniatis T. (1989) In “Molecular cloning: a laborary manual.” (2nd ed.) Cold Spring Harbor Laboratory Press, New York, pp. E5, 1.21-1.25, 7.37-7.52.
    Sanger , F., Nicklen, S. and Coulson, A. R. (1977) DNA sequencing with chain-termination inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
    Sasaki, T., Sukegawa, K., Michiya, M., Fukuda, S., Tomatsu, S., and Orii, T. (1991) Purification and partial characterization of -N-acetylglucosaminidase from human liver. J. Biochem. 110:842-846.
    Schmidtchen, A., Greenberg, D., Zhao, H. G., Li, H. H., Huang, Y., Tieu, P., Zhao, H. Z., Cheng, S., Zhao, Z., Whitley, C. B., Di Natale, P., and Neufeld, E. F. (1998) NAGLU mutations underlying Sanfilippo syndrome type B. Am. J. Hum. Genet. 62:64-69.
    Scott, H. S.,Nelson, P.V., MacDonald, M. E., Gusella, J. F., Hopwood, J. J., and Morris, C. P. (1992) An 86-bp VNTR within IDUA is the basis of the D4S111 polymorphic locus. Genomics 14:1118-1120.
    Shull, R. M., Kakkis, E. D., McEntee, M. F., Kania, S. A., Jonas, A. J., and Neufeld, E. F. (1994) Enzyme replacement in a canine model of Hurler syndrome. Proc. Natl. Acad. Sci. USA 91:12937-12941.
    Shull, R. M., Lu, X., McEntee, M. F., Bright, R. M., Pepper, K. A., and Kohn, D. B. (1996) Myoblast gene therapy in canine mucopolysaccharidosis : abrogation by an immune response to -L-iduronidase. Hum. Gene Ther. 7:1595-1603.
    van de Kamp, J. J. P., Niermeijer, M. F., von Figura, K., and Giesberts, M. A. H. (1981) Genetic heterogeneity and clinical variability in the Sanfilippo syndrome (types A, B and C). Clin. Genet. 20:152-160.
    Vellodi, A., Young, E., New, M., Pot-Mees, C., and Hugh-Jones, K. (1992) Bone marrow transplantation for Sanfilippo disease type B. J. Inher. Metab. Dis. 15:911-918.
    Vellodi, A., Young, E. P., Copper, A., Wraith, J. E., Winchester, B., Meaney, C., and Ramas, U. (1997) Bone marrow transplantation for mucopolysaccharidosis type : experience of two British centres Arch. Dis. Child. 76:92-99.
    von Figura, K. (1977) Human -N-acetylglucosminidase: purifictation and proterties Eur. J. Biochem. 80:525-533.
    von Figura, K., Hasilik, A., Steckel, F., and van de Kamp, J. (1984) Biosynthesis and maturation of -N-acetylglucosaminidase in normal and Sanfilippo B-fibroblasts. Am. J. Hum. Genet. 36:93-100.
    Weber, B., Blanch, L., Clements, P. R., Scott, H. S., and Hopwood, J. J., (1996) Cloning and expression of the gene involved in Sanfilippo syndrome (mucopolysaccharidosis IIIB). Hum. Mol. Genet. 5:771-777.
    Zhao, H. G., Li, H. H., Bach, G., Schmidtchen, A., and Neufeld, E. F. (1996) The molecular basis of Sanfilippo syndrome type IIIB. Proc. Natl. Acad. Sci. USA 93:6101-6105.
    Zhao, K. W., Li, H. H., and Neufeld. E. F. (1997) Cloning and expression of mouse gene encoding the lysosomal -N-acetylglucosaminidase. Genbank accession number MMU85247.
    Zhao, H. G., Aronovich, E. L., and Whitley, C. B. (1998) Genotype-phenotype correspondence in Sanfilippo syndrome type B. Am. J. Hum. Genet. 62:53-63.

    QR CODE