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研究生: 何智豊
Jhih-Li, He
論文名稱: 設計合成及活性評估用以探測 OMP Decarboxylase 反應機制之 Uridine 衍生物
Design、Synthesis and Biological Evaluation of Uridine Derivatives as Mechanistic Probes for OMP Decarboxylase
指導教授: 簡敦誠
學位類別: 碩士
Master
系所名稱: 化學系
Department of Chemistry
論文出版年: 2008
畢業學年度: 96
語文別: 中文
論文頁數: 141
中文關鍵詞: 酵素核酸機制
英文關鍵詞: OMP decarboxylase, uridine derivatives, pseudouridine, bioisosteric replacement
論文種類: 學術論文
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  • 摘要
    Orotidine 5'-monophosphate decarboxylase (ODCase) 催化的orotidine 5'-monophosphate (OMP) 去羧基反應是生物體內合成pyrimidine類核酸化合物重要步驟。針對ODCase酵素及其受質的研究已發現,應用在抗病毒、抗瘧疾及抗癌等疾病上相當有發展的潛力。為了解ODCase催化機制,利用可能成為ODCase受質或抑制劑的化合物與該酵素反應後,觀察結果推測;因此,考慮在uridine鹼基上C6位置作官能基修飾及置換的可能性,設計並準備合成一系列的OMP類似物,其中包含有C-nucleoside及N-nucleoside的類似物。
    OMP C-nucleoside的類似物包括有pseudouridine及其衍生物。利用文獻中的合成方法,可由5-bromouracil製備醣具保護的pseudouridine。我們亦嘗試利用合成pseudouridine的方法來製備6-methylpseudouridine,但因進行C-ribosylation時反應的位置是在鹼基環外C6的甲基上,而非預期中的環上C5位置,結果並沒有成功。
    設計合成OMP類似物的N-nucleoside方面包含,在鹼基C6位置上的tetrazoles, amide oximes, imidates 及親核性取代基的置換;反應起始物6-cyanouridine的衍生物由文獻合成方法製備而成;6-(tetrazol-5-yl)uridine,從uridine開始製備,經形成6-cyanouridine後與sodium azide進行環化加成反應,經六個合成步驟後可以得到,總產率約29 %。Amide oxime官能基衍生物方面,經由6-cyanouridine的中間產物進行合成,但因醣上保護基移除時所產生的不穩定性,而無法得到。以親核性取代基對6-cyanouridine衍生物上cyano官能基直接進行取代反應也無法順利得到產物。在本篇論文中,我們已成功合成出6-(tetrazol-5-yl)uridine;此化合物是OMP的bioisostere,可用來作為探測ODCase反應機制的受質或抑制劑。

    Abstract
    Orotidine 5'-monophosphate decarboxylase (ODCase) catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP), an essential step in pyrimidine nucleic acid biosynthesis. It has been identified as a potential target for antiviral, antiparasitic and antitumor therapies. In order to develop effective mechanistic probes to disclose the possible mechanisms for ODCase, a series of OMP analogs modified at the C6- position of uridine were designed and prepared to synthesize, including N-nucleoside and C-nucleoside analogs.
    The C-nucleoside analogs of OMP / UMP included pseudouridine and its derivatives. The sugar protected pseudouridine was prepared based on literature procedures from 5-bromouracil. However, attempts to synthesize 6-methylpseudouridine based on the same approach were unsuccessful. The C-ribosylation occurred at the exocyclic methyl group, instead of the expected pyrimidine ring carbon.
    The N-nucleoside analogs of OMP designed based on bioisosteric replacement of carboxylate including derivatives with tetrazoles, amide oximes, imidates and nucleophilic substituents on the C6 position of uridine. 6-Cyanouridine derivatives were prepared from uridine by literature procedures as starting materials. 6-(Tetrazol-5-yl)uridine was prepared from uridine through the cycloaddition of 6-cyanouridine intermediate with sodium azide in 6 steps with an over yield of 29 %. Amide oxime functional group was also obtain from the reaction of 6-cyanouridine with hydroxylamine. However, the removal of sugar protecting groups were unsuccessful. Direct substitutions of the cyano group of 6-cyanouridine derivatives with nucleophiles were unsuccessful. In this thesis, we have successfully synthesized 6-(tetrazol-5-yl)uridine. It is a bioisostere of OMP and potential mechanistic probe for ODCase.

    目錄 摘要………………………………………………………………....4 第一章 緒論 1.1 簡介……………………………………………………………..7 1.2 ODCase反應機制之探討……………………..………………..9 1.3 Bioisosteric Replacement之介紹……………………………...21 1.4 參考文獻………………………………………………..……..26 第二章 Pseudouridine及其衍生物6-Methylpseudouridine 之合成 2.1 序論…………………………………………………………….30 2.2 化學合成及方法……………………………………………….32 2.3 結果與討論…………………………………………………….40 2.4 結論………………………………………………………….…49 2.5 實驗步驟……………………………………………………….50 2.6 參考文獻……………………………………………………….58 第三章 6位取代Uridine衍生物之合成 3.1序論…………………………………………………………..….61 3.2化學合成及方法………………………………………………...67 3.3 結果與討論……………………………………………………..72 3.4 結論……………………………………………………………..81 3.5 實驗步驟………………………………………………………..82 3.6 參考文獻………………………………………………………..86 光譜資料………………………………………………………...…88

    參考文獻
    1. Radzicka, A.; Wolfenden, R. A Proficient Enzyme. Science 1995, 267, 90-93.
    2. Miller, B. G.; Wolfenden, R. Catalytic proficiency: The unusual case of OMP decarboxylase. Annu. ReV. Biochem. 2002, 71, 847-885.
    3. Sievers, A.; Wolfenden, R. Equilibrium of formation of the 6-carbanion of UMP, a potential intermediate in the action of OMP decarboxylase. J. Am. Chem. Soc. 2002, 124, 13986-13987.
    4. Snider, M. J.; Wolfenden, R. The rate of spontaneous decarboxylation of amino acids. J. Am. Chem. Soc. 2000, 122, 11507-11508.
    5. Houk, K. N.; Tantillo, D. J.; Stanton, C.; Hu, Y. F. What have theory and crystallography revealed about the mechanism of catclysis by orotidine monophosphate decarboxylase? Top Curr Chem, 2003, 238, 1–22.
    6. Jones, M. E. Pyrimidine nucleotide biosynthesis in animals: Genes, enzymes, and regulation of UMP biosynthesis. Annu. ReV. Biochem. 1980, 49, 253-279.
    7. Gero, A. M.; O’Sullivan, W. J. Purines and pyrimidines in malarial parasites. Blood Cells, 1990, 16, 467-484.
    8. Levine, H. L.; Brody, R. S.; Westheimer, F. H. Inhibition of Orotidine-5’-Phosphate Decarboxylase by 1-(5’-Phospho–Beta -D-Ribofuranosyl)Barbituric acid, 6-Azauridine 5’-Phosphate, and Uridine 5’-Phosphate. Biochemistry 1980, 19, 4993-4999.
    9. Ringer, D. P.; Howell, B. A.; Etheredge, J. L. Alteration in de novo pyrimidine biosynthesis during uridine reversal of pyrazofurin -inhibited DNA synthesis. J. Biolchem. Toxicol. 1991, 6, 19-27.
    10. Cadman, E. C.; Dix, D. E.; Handschumacher, R. E. Clinical, biological and biochemical effect of pyrazofurin. Cancer Res. 1978, 38, 682-698.
    11. Silverman, R. B.; Groziak, M. P. Model Chemistry for a Covalent Mechanism of Action of Orotidine 5’-Phosphate Decarboxylase. J. Am. Chem. Soc. 1982, 104, 6434-6439.
    12. Acheson, S. A.; Bell, J. B.; Jones, M. E.; Wolfenden, R. Orotidine-5’-Monophosphate Decarboxylase Catalysis – Kinetic Isotope Effects and the State of Hybridization of a Bound Transition- State Analog. Biochemistry 1990, 29, 3198-3202.
    13. Shostak, K.; Jones, M. E. Orotidylate Decarboxylase – Insights into the Catalytic Mechanism from Substrate-Specificity Studies. Biochemistry 1992, 31, 12155-12161.
    14. Wu, N.; Pai, E. F. Crystal structures of inhibitor complexes reveal an alternate bindingmode in orotidine-5’-monophosphate decarboxylase. J. Biol. Chem. 2002, 277, 28080-28087.
    15. Houk, K. N.; Lee, J. K.; Tantillo, D. J.; Bahmanyar, S.; Hietbrink, B. N. Crystal structures of orotidine monophosphate decarboxylase:Dose the structure reveal the mechanism of nature’s most proficient enzyme? Chembiochem 2001, 2, 113-118.
    16. Miller, B. G.; Hassell, A. M.; Wolfenden, R.; Milburn, M. V.; Short, S. A. Anatomy of a proficient enzyme: The structure of orotidine-5’-monophosphate decarboxylase in the presence and absence of a potential transition state analog. Proc. Natl. Acad. Sci. USA 2000, 97, 2011-2016.
    17. Miller, B. G.; Hassell, A. M.; Wolfenden, R.; Milburn, M. V.; Short, S. A. Anatomy of a proficient enzyme: The structure of OMP decarboxylase in the absence and presence of a postulated transition state analog. Biochemistry 2000, 39, 1560-1560.
    18. Harris, P.; Poulsen, J. C. N.; Jensen, K. F.; Larsen, S. Structural basis for the catalytic mechanism of a proficient enzyme: Orotidine-5’-monophosphate decarboxylase. Biochemistry 2000, 39, 4217-4224.
    19. Ning, W.; Pai, E. F. Crystallographic studies of native and mutant orotidine-5’-monophosphate decarboxylase. Top. Curr. Chem. 2004, 238, 23-42.
    20. Begley, T. P.; Ealick, S. E. Enzymatic reactions involving novel mechanisms of carbanion stabilization. Curr. Opin. Chem. Biol. 2004, 8, 508-515.
    21. Beak, P.; Siegel, B. Mechanism of decarboxylation of 1,3-dimethylorotic acid. A model for orotidine 5'-phosphate Decarboxylase. J. Am. Chem. Soc. 1976, 98, 3601.
    22. Lee, J. K.; Houk, K. N. A Proficient Enzyme Revisited: The Predicted Mechanism for Orotidine Monophosphate Decarboxylase. Science 1997, 276, 942.
    23. Lee, T. S.; Chong, L. T.; Chodera, J. D.; Kollman, P. An Alternative Explanation for the Catalytic Proficiency of Orotidine 5'-Phosphate Decarboxylase. J. Am. Chem. Soc. 2001, 123, 12837.

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