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研究生: 永資陵
Zi-Ling Yong
論文名稱: 脊髓小腦運動失調症第十七型之微生物藥物篩檢模式:以微生物抗氯黴素能力作為篩檢標記
High-Throughput Microorganism-Based Screening of Novel Molecules for SCA 17 Treatment: Monitoring TBP solubility by chloramphenicol resistance
指導教授: 李冠群
Lee, Guan-Chiun
學位類別: 碩士
Master
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2010
畢業學年度: 98
語文別: 中文
論文頁數: 84
中文關鍵詞: SCA 17氯黴素藥物篩檢
論文種類: 學術論文
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  • 目前已知有十種經遺傳的神經退化性疾病是和多麩醯胺(polyglutamine, polyQ)相關的疾病,其中第十七型脊髓小腦萎縮症(spinocerebellar ataxia type 17, SCA 17)是由於染色體上6q27位置的TATA binding protein (TBP)基因之轉譯區中,CAG三核苷酸發生重複擴增所導致。TBP基因所轉譯出來的蛋白質為細胞內重要的轉錄調節因子,而擴增的polyQ可能會影響到TBP蛋白的功能,因此推測SCA 17可能分子的致病機制為:突變的TBP蛋白質其擴增的polyQ片段,會導致蛋白質錯誤摺疊,最後形成不溶性的包涵體 (inclusion body),進而造成神經細胞的功能異常、病變甚至死亡。而在活體(in vivo)和離體(in vitro)實驗中也可以發現,抑制錯誤延長性polyQ片段的蛋白聚集,可以抑制polyQ相關疾病的產生。本研究在大腸桿菌中建立TBP-chloramphenicol acetyltransferase (CAT,氯黴素乙醯轉移酶) 融合蛋白的表達系統,此細菌藥物篩檢模式是將TBP蛋白凝集現象與細菌細胞失去氯黴素抗藥性現象結合,亦即以抗藥性蛋白做為genetic marker protein,任何有助於蛋白溶解度提升之藥物,皆可藉由細菌本身抗藥性提升而被篩選出來。經表現型分析、基因型分析、西方轉漬分析及CAT 活性分析後,發現以Tuner、JM109、JM109(DE3)及BL21(DE3)大腸桿菌分別做為pGEX及pET system的表達宿主,此二表達系統符合篩藥條件(即長擴增的TBP片段抗藥性低於短擴增的TBP片段),故Tuner/pGEX-tTBP60Q-CAT、JM109/pGEX-tTBP60Q-CAT、JM109(DE3)/pGEX-tTBP60Q-CAT及BL21(DE3)/pET-tTBP60Q-CAT可以作為篩藥模式。在建立篩檢模式之正控制組方面,選定Tuner/pGEX-tTBP60Q-CAT、JM109/pGEX-tTBP60Q-CAT及BL21(DE3)/pET-tTBP60Q-CAT微生物模式,以具有潛力之藥物(例如海藻糖及剛果紅)做測試,結果發現海藻糖及剛果紅似乎無法抑制不可溶性長擴增TBP蛋白凝集,可能是因海藻糖及剛果紅無法抑制此系統表達之長擴增TBP蛋白之凝集。當使用低溫誘導處理時,結果發現長擴增TBP蛋白溶解度提升,且其抗藥性有增加之現象,證明此系統可做為其他藥物之篩檢模式。本研究提供一種可以大量快速進行SCA17藥物篩檢的微生物模式,經由表現型分析、基因型分析、西方轉漬及CAT活性分析,找尋具有抑制長擴增TBP蛋白凝集之潛力藥物。

    Many neurodegenerative diseases are linked to abnormally expanded CAG repeats in the coding regions of responsible genes. One of them, spinocerebellar ataxia type 17 (SCA 17) was identified with CAG trinucleo- tide repeat expansion in the TATA-box binding protein (TBP) gene on chromosome 6q27. The possible molecular pathogenic mechanisms in SCA17 could be aggregation caused by mutant TBP with expanded polyglutamine strentches and dysfuction of transcriptional regulation by loss of function. Although the detail pathogenic mechanism is unknown in poly-Q disease, inhibition of aggregation is effective to protect cell in vitro and in vivo. In this study, we establish an E. coli. expression system to express the TBP-chloramphenicol acetyltransferase (CAT) fusion proteins. We constructed a simple in vivo system for assessing protein solubility that involves expressing a fusion of an expanded polyQ TBP with CAT, the enzyme responsible for conferring bacterial resistance to chloramphenicol. In plasmid construction, we used pGEX and pET plasmid to construct several protein expression vectors including those harboring TBP-CAT fusion genes with various length of polyQ tract、pGEX-CAT and pET-CAT. In protein expression, several E. coli. strains were tested to express these recombinant proteins by Cm resistance, and expression conditions were obtained to express CAT fuses with insoluble TBP-Qn, they confer significantly lower or even no Cm resistance, and vice versa. We validated this drug screening system by phenotypic screening, genotyping, Western blotting and CAT assay. The result showed that Tuner and BL21(DE3) E. coli. expression system can express CAT fuses (Tuner/pGEX system、JM109/pGEX system、JM109(DE3)/pGEX system and BL21(DE3)/pET system) with insoluble TBP-Qn, they confer significantly lower Cm resistance, and vice versa. We used Tuner/pGEX-tTBP60Q-CAT and BL21(DE3)/pET-tTBP60Q-CAT as drug screening model. In model test of positive control, candidate drugs capable of inhibiting poly-Q protein aggregation (such as trehalose and congo red) were tested to prevent TBP aggregation. The results show that trehalose and congo red can not inhibit long poly-Q TBP aggregation by Cm resistance. Maybe trehalose and congo red could not suppress the expression of this system to extend the length of TBP protein aggregation. To prove that this system can be used as the screening model of other drugs, thus reducing the culture temperature, was found poly-Q protein reduced aggregation, and the resistance was increasing. This study could provide a high-throughput microbial drug screening system, and this system can be used as other drug screening models and analysis by phenotype, genotype analysis, Western blot and CAT activity analysis to find inhibit the aggregation of long extension of TBP protein potential drug.

    目錄 I 表目錄 IV 圖目錄 V 附錄 VII 摘要 VIII Abstract X 壹、緒論 1 一、 神經退化性疾病 1 二、 脊髓小腦運動失調症 1 三、 第十七型脊髓小腦運動失調症 3 四、 藥物開發及篩檢模式 4 五、 氯黴素乙醯轉移酶融合基因之系統 5 貳、研究目的 7 参、研究材料與方法 8 一、 人類TBP之全長cDNA的取得 8 二、 重組質體之建構 8 (一) 插入片段之建構 8 (二) 載體之建構 12 (三) 純化DNA片段 12 (四) 接合反應 13 (五) DNA製備 13 (六) DNA電泳分析 14 (七) DNA定序 14 三、 質體轉型 14 (一) 大腸桿菌勝任細胞之製備 15 (二) 大腸桿菌之轉型 15 四、 藥物篩檢模式之建立與評估 16 (一) 表現型分析—氯黴素的最大抗藥濃度 17 (二) 各重組質體於轉型菌株內的鑑定—基因型分析 22 (三) 重組蛋白之定性分析—蛋白質電泳與西方轉漬分析 22 (四) 重組蛋白之定量分析—氯黴素乙醯轉移酶活性分析 28 五、 建立篩檢模式之正控制組 29 (一) 以海藻糖處理作為正控制組 30 (二) 以剛果紅處理作為正控制組 32 (三) 以低溫誘導處理作為正控制組 32 肆、結果 33 一、 重組質體之建構 33 二、 藥物篩檢模式之建立與評估 33 (一) 表現型分析—氯黴素的最大抗藥濃度 34 (二) 各重組質體於轉型菌株內的鑑定—基因型分析 35 (三) 重組蛋白之定性分析—蛋白質電泳與西方轉漬分析 36 (四) 重組蛋白之定量分析—氯黴素乙醯轉移酶活性分析 37 (五) 選定之微生物模式 38 三、 建立篩檢模式之正控制組 38 (一) 以海藻糖處理作為正控制組 38 (二) 以剛果紅處理作為正控制組 40 (三) 以低溫誘導處理作為正控制組 41 伍、討論 43 一、 篩檢模式之建立與評估 43 (一) 不同質體系統之比較 43 (二) 系統之再現性 44 (三) 大腸桿菌與藥物通透性 45 二、 篩檢模式之正控制組 45 陸、參考文獻 48 表目錄 表 一、兩種表達系統之宿主比較 51 圖目錄 圖 一、pGEX-GST-fTBP20/40Q 之重組質體 52 圖 二、pGEX-tTBP-(Q)n-CAT 重組質體及融合蛋白 53 圖 三、pET-tTBP-(Q)n-CAT 重組質體及融合蛋白 54 圖 四、pGEX system 的EcoR V、Not I 限制酶圖譜分析 55 圖 五、pET system 的Nde I、Not I 限制酶圖譜分析 56 圖 六、Tuner /pGEX system 的基因型分析 57 圖 七、BL21(DE3)/pET system 的基因型分析 58 圖 八、pGEX system 於各大腸桿菌宿主之表現型分析 60 圖 九、pET system 於各大腸桿菌宿主之表現型分析 61 圖 十、pGEX-tTBP20Q/20Q-CAT 融合蛋白的Coomassie blue 染色及 Western Blot 62 圖 十一、pGEX-tTBP60Q/60Q-CAT 融合蛋白的Coomassie blue 染色 及Western Blot 63 圖 十二、pGEX-tTBP(Q)n-CAT 與pGEX-CAT 融合蛋白的Coomassie blue 染色及Western Blot 64 圖 十三、pET-tTBP20Q/20Q-CAT 融合蛋白的Coomassie blue 染色及 Western Blot 65 圖 十四、pET-tTBP60Q/60Q-CAT 融合蛋白的Coomassie blue 染色及 Western Blot 66 圖 十五、pGEX system 和pET system 融合蛋白的CAT 活性分析 67 圖 十六、通透劑對Tuner/pGEX-tTBP-60Q-CAT、 BL21(DE3)/pET-tTBP60Q-CAT 及JM109/pGEX-tTBP-60Q-CAT 以 海藻糖處理的表現型影響 68 圖 十七、海藻糖水解酶抑制劑對Tuner/pGEX-tTBP-60Q-CAT 及 BL21(DE3)/pET-tTBP60Q-CAT 以海藻糖處理表現型的影響 70 圖 十八、Tuner/pGEX-tTBP-60Q-CAT 及 BL21(DE3)/pET-tTBP60Q-CAT 以不同濃度海藻糖處理的表現型 影響 71 圖 十九、Tuner/pGEX-tTBP60Q-CAT 以剛果紅處理的表現型分析 72 圖 二十、Tuner/pGEX system 以低溫誘導處理的表現型分析 73 圖 二十一、以低溫誘導處理之Tuner/pGEX-tTBP60Q-CAT 融合蛋白 Coomassie blue 染色及Western Blot 74 圖 二十二、以低溫誘導處理之Tuner/pGEX-tTBP60Q-CAT 融合蛋白 CAT 活性分析 75 圖 二十三、HPLC 分析JM109 胞内海藻糖之含量 76 附錄 附錄 一、顯性小腦萎縮症相關疾病分類 77 附錄 二、SCA相關疾病分類 78 附錄 三、CAG三核苷酸重複序列擴增所導致的疾病分類 79 附錄 四、多麩醯胺疾病的治療策略 80 附錄 五、曝氣式96孔深盤養菌盒震盪培養方法 81 附錄 六、pGEX-5X-3-fTBP60Q-CAT核苷序列及其轉錄蛋白之胺基酸 82

    Apostol BL, Kazantsev A, Raffioni S, Illes K, Pallos J, Bodai L, et al. (2003). A cell-based assay for aggregation inhibitors as therapeutics of polyglutamine-repeat disease and validation in Drosophila. Proc Natl Acad Sci USA. 100:5950-5955.
    Berger Z, Ravikumar B, Menzies FM, Oroz LG, Underwood BR, Pangalos MN, et al. (2006). Rapamycin alleviates toxicity of different aggregate-prone proteins. Hum Mol Genet. 15:433-442.
    Claudia C, Caterina M, Franco T, Marco S, Alessandro B, Chiara M, et al. (2006). SCA28, a novel form of autosomal dominant cerebellar ataxia on chromosome 18p11.22–q11.2. Brain. 129:235-242.
    Fischbeck KH (2001). Polyglutamine expansion neurodegenerative disease. Brain Res Bull. 56(3-4) :161-3.
    Gatchel JR, Zoghbi HY. (2005). Diseases of unstable repeat expansion: mechanisms and common principles. Nat Rev Genet. 6:743-755.
    Harding AE. (1982). The clinical features and classification of the late onset autosomal dominant cerebellar ataxias. Brain. 105:1–28.
    Harding AE. (1993). Clinical features and classification of inherited ataxias. Adv Neurol. 61:1-14.
    Heiser V, Engemann S, Brocker W, Dunkel I, Boeddrich A, Waelter S, et al. (2002). Identification of benzothiazoles as potential polyglutamine aggregation inhibitors of Huntington's disease by using an automated filter retardation assay. Proc Natl Acad Sci USA. 4:16400-16406.
    Maxwell KL, Mittermaier AK, Forman-Kay JD, Davidson AR. (1999) A simple in vivo assay for increased protein solubility. Protein Science. 8(9):1908-11.
    Nguyen T, Hamby A, Massa SM. (2005). Clioquinol down-regulates mutant huntingtin expression in vitro and mitigates pathology in a Huntington's disease mouse model. Proc Natl Acad Sci USA.102:11840-11845.
    Perez MK, Paulson HL, Pendse SJ, Saionz SJ, Bonini NM, Pittman RN (1998). Recruitment and the role of nuclear localization in polyglutamine-mediated aggre- gation. J Cell Biol. 143:1457-1470.
    Robben J, Massie G, Bosmans E, Wellens B, Volckaert G. (1993). An Escherichia coli plasmid vector system for high-level production and purification of heterologous peptides fused to active chloramphenicol acetyltransferase. Gene. 126:109–113.
    Sanchez I, Mahlke C, Yuan J. (2003). Pivotal role of oligomerization in expanded polyglutamine neurodegenerative disorders. Nature. 421:373- 379.
    Scherzinger E, Lurz R, Turmaine M, Mangiarini L, Hollenbach B, Hasenbank R, et al. (1997). Huntingtin-encoded polyglutamine expansions form amyloid-like protein aggregates in vitro and in vivo. Cell. 90:549-558.
    Scherzinger E, Sittler A, Schweiger K, Heiser V, Lurz R, Hasenbank R, et al. (1999). Self-assembly of polyglutamine-containing huntingtin fragments into amyloid-like fibrils: implications for Huntington's disease pathology. Proc Natl Acad Sci USA. 96:4604-4609.
    Smith DL, Portier R, Woodman B, Hockly E, Mahal A, Klunk WE, et al. (2001). Inhibition of polyglutamine aggregation in R6/2 HD brain slices-complex dose-response profiles. Neurobiol Dis. 8:1017-1026.
    Soong BW, Lu YC, Choo KB, Lee HY. (2001). Frequency analysis of autosomal dominant cerebellar ataxias in Taiwanese patients and clinical and molecular charac- terization of spinocerebellar ataxia type 6. Arch Neurol. 58:1105-1109.
    Tanaka M, Machida Y, Niu S, Ikeda T, Jana NR, Doi H, et al. (2004). Trehalose alleviates polyglutamine- mediated pathology in a mouse model of Huntington disease. Nat Med. 10:148-154.
    Tanaka M, Machida Y, Nukina N. (2005). A novel therapeutic strategy for polyglutamine disease by stabilizing aggregation-prone proteins with small molecules. J Mol Med. 83:343-352.
    Won YL, Dong KJ, MD, Myung RO, Ji EL, Seng MS, et al. (2003). Frequency Analysis and Clinical Characterization of Spinocerebellar Ataxia Types 1, 2, 3, 6, and 7 in Korean Patients. Arch Neurol. 60:858-863.

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