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研究生: 林玄原
Hsuan-Yuan Lin
論文名稱: 脊髓小腦運動失調症之族群遺傳分析與CTG三核苷重複擴增的分子致病研究
Genetic studies of spinocereballar ataxias and molecular impacts of CTG trinucleotide expansion
指導教授: 李桂楨
Lee, Guey-Jen
學位類別: 博士
Doctor
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2007
畢業學年度: 95
語文別: 英文
論文頁數: 116
中文關鍵詞: 脊髓小腦運動失調症三核苷重複擴增肌強直症反意RNA開放性解讀架構基因轉殖小鼠微陣列分析二維螢光差異膠體電泳
英文關鍵詞: Spinocerebellar ataxia, trinucleotide repeat expansion, myotonic dystrophy, anti-snese RNA, open reading frame, transgenic mouse, microarray analysis, 2-D DIGE
論文種類: 學術論文
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  • 脊髓小腦運動失調症(SCAs)為一群顯性遺傳的神經退化性疾病,目前已確定的各型中,絕大多數是由致病基因中的三核苷酸或五核苷酸重複擴增所致。本論文首先建立了臺灣地區族群的SCAs致病基因之遺傳資料庫,並且檢測尚未確定的病例。在我們的檢測結果中,臺灣SCAs族群當中最多的為SCA3;且臺灣的族群分佈頻率與日本及高加索人群極為相似。此外,我們亦發現五名帕金森氏症患者具有SCA8或是SCA17基因的突變 ,顯示這兩種基因的突變可能以非小腦症狀的表現型來顯現。
    SCA8與其他的SCAs不同之處在於其雖然也是由三核苷酸重複擴增所造成,但其致病基因中的三核苷酸為CTG,且位於非轉譯區,而非像其他型SCAs絕大多數為轉譯區中的CAG擴增。此外,SCA8基因所轉錄RNA的5端,與KLHL1基因之mRNA的5端互補,即為KLHL1基因的反意RNA。本論文的第二部份為利用細胞與基因轉殖小鼠模式來探討SCA8的可能致病機轉。在細胞模式中,我們發現CTG擴增的SCA8對於KLHL1基因表現的抑制較不若正常SCA8來得強;此外,雖然之前的研究認為SCA8基因並不會進行轉譯,但我們的研究證實了SCA8基因中的開放解讀架構(open reading frame,ORF)確實可以轉譯成蛋白質,且CTG擴增的SCA8與ORF1都會形成細胞內不可溶的包涵體。因此,SCA8的反意調控與可轉譯的開放解讀架構都可能與致病過程相關。我們亦建立SCA8的基因轉殖小鼠模式,雖然行為測定與小腦組織形態上都未發現異狀,但卻出現四肢緊抱(clasping)的現象。因此,此現象或許可提供作為致病機轉或是藥物研究之指標。

    Spinocerebellar ataxias (SCAs) comprise a heterogeneous neurodegenerative disorders that are dominantly inherited. Among the identified SCAs, the trinucleotide or pentanucausing mutations have been shown to cause most SCAs. However, the prevalence of SCAs varies among populations. In the first part, in order to set up a database of the trinucleotide- and pentanucleotide-repeat expansions leading to SCA, we have assessed the repeat size at the SCA1, SCA2, MJD/SCA3, SCA6, SCA8, SCA10, SCA12, SCA17, and DRPLA loci. MJD/SCA3 (46%) was the most common autosomal dominant SCA in the Taiwanese cohort, followed by SCA6 (18%) and SCA1 (3%). The frequencies of large normal alleles are closely associated with the prevalence of SCA1, SCA2, MJD/SCA3, SCA6, and DRPLA among Taiwanese, Japanese, and Caucasians. In addition, abnormal expansion of SCA8 and SAC17 genes were detected in patients with PD, suggesting these two mutations might manifest as non-cerebellar symptoms.
    Unlike most SCAs caused by expansion of a coding CAG trinucleotide repeat, SCA8 has been shown to link to CTG triplet repeat expansion in the 3' untranslated region of SCA8 gene on 13q21. The 5' end of the SCA8 transcript overlaps the transcription and translation start sites, as well as the first splice donor sequence of the Kelch-like 1 (KLHL1) gene of the complementary strand. The aim of the other part is to uncover the plausible mechanisms using cell and transgenic mouse as model systems. In vitro studies demonstrated that the suppressive activity for KLHL1 was significantly different between SCA8 transcripts carrying 0 and 157 combined repeats, and that SCA8 RNA was translatable. Both the expressed GFP-tagged ORF1 and polyleucine-expansion ORF3 proteins formed aggregates. Thus, SCA8 trans effects and polyleucine-containing aggregateds might be correlated with the pathogenesis of SCA8. In addition, the SCA8 overexpression transgenic mouse model showed no difference of motor activity and histopathological morphology of Purkinje cells between transgenic mice and their control littermates. However, hind-limb clasping was observed in transgenic mice with 157 repeats during tail suspension. Although no marked pathological phenotypes were found in our model, the clasping phenotype might be used to be a characteristic evaluation index for drugs screening as in Huntington’s disease mice.

    Index.....I Abstract (Chinese).....III Abstract.....V List of figures and tables.....VII Introduction.....1 Spinocerebellar ataxia type 1 (SCA1).....3 Spinocerebellar ataxia type 2 (SCA2).....3 Spinocerebellar ataxia type 3 (SCA3).....4 Spinocerebellar ataxia type 6 (SCA6).....5 Spinocerebellar ataxia type 7 (SCA7).....5 Spinocerebellar ataxia type 8 (SCA8).....6 Spinocerebellar ataxia type 10 (SCA10).....6 Spinocerebellar ataxia type 12 (SCA12).....7 Spinocerebellar ataxia type 17 (SCA17).....7 Organization of SCA8 gene.....9 The role of KLHL1 protein.....10 Natural antisense transcripts.....11 Myotonic dystrophy type 1 (DM1).....11 Internal ribosome entry segment (IRES).....12 Animal models of SCA8.....13 Aims.....15 Materials and methods.....16 Subjects.....16 Genomic DNA extraction.....16 Polymerase chain reaction (PCR) and genotyping.....17 Gel extraction.....17 Statistical analyses.....18 SCA8 cDNA cloning.....18 Site-directed mutagenesis.....19 pEF-SCA8 constructs.....19 KLHL1 cDNA cloning and pEF-KLHL1-EGFP construct.....20 pCMV-(CAG)36-IRES-EGFP construct.....20 pCMV-ORF1-EGFP construct.....20 pCMV-SCA8-EGFP constructs.....21 pCMV-K-ORF3-EGFP constructs.....21 Preparation of electro-competent cells.....21 Ligation.....22 Electroporation.....22 Minipreparation of plasmid DNA.....23 Midipreparation of plasmid DNA.....23 Cell cultivation.....24 Transfection.....24 Fluorescence activated cell sorting (FACS) analysis.....25 Immunofluorescence analysis.....25 Cell lysate preparation.....26 Cytoplasmic and nuclear proteins preparation.....27 Western blotting (immunoblotting).....27 RNA isolation.....28 Establishment of SCA8 stably expressing Flp-In T-REx 293 cell lines.....29 Cell proliferation assessment (WST-1 assay).....29 Transgene construction and SCA8 transgenic mouse generation.....30 Transgenic mouse genotyping.....30 Characterization of transgene copy numbers of transgenic mouse lines.....31 RNA isolation from mouse brain tissues and reverse transcription-polymerase chain reaction (RT-PCR).....31 Rotarod test.....31 Immunohistochemical analysis.....32 RNA cleanup.....33 Microarray analysis.....33 Real-time RT-PCR (Quantitative RT- PCR).....34 Protein samples preparation for proteomic analysis.....35 Minimal labeling with CyDye Fluors for 2-D difference gel electrophoresis (DIGE).....35 IPG strip rehydration and first-dimension isoelectric focusing (IEF).....36 Second-dimension SDS-PAGE.....36 Gel staining with SYPRO Ruby.....37 Image analysis.....37 In-gel digestion.....37 Mass Spectrometry.....38 Results.....39 Trinucleotide or pentanucleotide repeat distributions.....39 Frequency of SCAs and genetic and clinical features of patients.....39 Frequency of large normal alleles.....40 SCA8 alleles with 75 to 92 repeats in PD patients.....40 SCA17 allele with 46 repeats in PD patient.....41 Regulation of KLHL1 and CAG repeat-containing RNA expression by SCA8.....41 SCA8 encodes translable ORF1 and ORF3.....43 ORF1 and expanded polyleucine-containing ORF3 proteins form aggregates.....44 Aggregated ORF1 and ORF3 proteins are localized in both nuclei and cytoplasm.....44 Generation and characterization of isogenic and inducible SCA8 cell lines.....45 Generation and characterization of SCA8 transgenic mice.....47 Expression of SCA8 transcripts in SCA8 transgenic lines.....47 Behavior assessment of transgenic mice by performance on the accelerating rotarod.....48 SCA8 transgene does not cause the morphological abnormalities of Purkinje cells.....48 SCA8 transgenic mice exhibit the clasping phenotype.....49 Proteomic analysis of SCA8 transgenic mice.....50 Discussion.....51 References.....62 Figure........84 Table.....107

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