簡易檢索 / 詳目顯示

研究生: 王世宗
Shih-Tsung Wang
論文名稱: cDNA微陣列基因表現圖譜於肺癌化學治療敏感性預測之應用
Prediction of sensitivity of lung cancer to chemotherapy by cDNA microarray analysis of gene expression profiles
指導教授: 王憶卿
Wang, Yi-Ching
學位類別: 碩士
Master
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2004
畢業學年度: 92
語文別: 英文
論文頁數: 96
中文關鍵詞: 肺癌抗藥性鉑帝爾cDNA微陣列分析技術即時聚合鏈反應
英文關鍵詞: lung cancer, drug resistance, cisplatin, cDNA microarray analysis, real-time PCR
論文種類: 學術論文
相關次數: 點閱:400下載:2
分享至:
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報
  • 肺癌為國人癌症死亡首位的,肺癌病人通常在腫瘤切除後五年內死於癌症復發或腫瘤轉移。又大部分的病人對於化療會產生抗藥性(drug resistance)。一些和化療藥物的抗藥性有關的研究在癌症細胞模式已經獲得證實。尋找和抗藥性有關的基因為當前重要的課題。一些分子層次的研究已經證實抗藥性的形成是由於多個基因(genetic)和外基因(epigenetic)的變異所導致的結果,而不是因為單一基因的變異所形成的機制。傳統上利用單一基因或少數基因的分析實不足以瞭解癌症抗藥性的形成機轉。因此,此研究的目的利用含有13675點基因/表現基因標記(expressed sequence tags)的cDNA微陣列分析技術(cDNA microarray analysis),利用五株對鉑帝爾(cisplatin/cis-diamminedichloroplatinum)有不同抗藥性的程度的肺癌細胞株(lung cancer cell lines),包括H23、H1437、H226、H1355、H647以及H14345,分析他們在先天上基因表現圖普的差異,以找出和抗藥性有關的共同基因。此外,此研究也以鉑帝爾的半致死劑量(IC50)處理以上五株細胞中對於鉑帝爾分別具有最大抗藥性感與最敏感性的細胞株H1435以及H23,並分析在短暫處理完藥物後不同的時間點(4, 5, 6, 8, 12, 24小時)的基因表現圖普的差異。結果顯示,在五株細胞中,有33個基因的基因表現會隨著抗藥性的升高而上升;84個基因的基因表現會隨著抗藥性的升高而被抑制。另外在鉑帝爾處理的部分,表現差異在2、3和4倍以上的基因分別有656、218和96個。即時聚合鏈反應(real-time PCR)分析9個基因,其中有5基因和為陣列分析的結果達到顯著相關。此研究提供了一群和和抗藥性有關的基因,但是未來必須建立一套基因調節的網路。
    關鍵詞:肺癌、抗藥性、鉑帝爾、cDNA微陣列分析技術、即時聚合鏈反應

    The great majority of lung cancer patients relapse with tumor that is largely refractory to further chemotherapeutic treatment. Many genetic alterations associated with drug resistance of cell models have been verified in cancers, but the precise molecular mechanisms remain unclear. It is important to identify genes related to drug resistance. Investigators using various molecular approaches have suggested that multiple genetic and epigenetic changes might correlate with drug resistance. Therefore, the present study used the cDNA microarray with 13675 genes/expressed sequence tags to analyze the expression profiles of five cell lines including H226, H1437, H1355, H647, and H1435, which had known resistance to cisplatin, to identify the common drug resistance genes. In addition, cisplatin-resistant H1435 versus cisplatin-sensitive H23 lung cancer cell lines that were transiently treated with cisplatin at their IC50 doses for 0, 1, 2, 4, 8, 20 hours. The data indicated that overexpression of 33 genes was commonly correlated with gradual increase of resistance in these five lung cancer cell lines, whereas low expression of 84 genes was correlated with gradual decrease of resistance to these cell lines. In addition, there were 656, 218, and 96 genes that their gene expressions were up to 2, 3 and 4 fold in H1435 cisplatin-treated samples, respectively. The confirmation study which used real-time reverse-transcriptase polymerase chain reaction (RT-PCR) was carried out in 9 genes. It found a significant correlation of the gene expression changes for 5 genes of 9 genes. This study identified novel genes associated with cisplatin resistance. This kind of analysis should build gene-regulatory networks in near future.
    Key words:lung cancer、drug resistance、cisplatin、cDNA microarray analysis、real-time PCR

    Abstract----------------------------------------------------1 Introduction--------------------------------------------- 5 I. Mechanism of drug resistance in lung cancer----6 II. History and application of cDNA microarray---13 III. Application of cDNA microarray in drug resistance of cancer----------------------------------- 21 Purpose----------------------------------------------------- 26 Materials and Methods--------------------------------- 27 I. Cell lines and their culture--------------------------- 27 II. Cisplatin treatment in H23 and H1435----------- 27 III. RNA extraction----------------------------------------- 28 IV. Agilent human 1 cDNA microarray kits----------- 29 V. cDNA microarray process---------------------------- 29 Result-------------------------------------------------------- 38 I. Initial results using the Agilent human 1 cDNA microarray ----------------------------------------------38 II. Basal level------------------------------------------ 38 III. Induced level-------------------------------------------- 40 IV. Sequential model--------------------------------------- 41 V. Correlation between PCR and gene expression--43 Discussion-------------------------------------------------------44 I. Basal level---------------------------------------------------- 44 II. Induced level------------------------------------------ 44 III. Correlation between PCR and gene expression------ 45 IV. Sequential model------------------------------------- 46 Future work and application---------------------- 47 Reference-------------------------------------------------- 48 Figures------------------------------------------------------ 66 Tables------------------------------------------------------- 76 FIGURE CONTENT Figure 1. The Agilent chip over-view--------------------------------------- 66 Figure 2. Self-hybridization-------------------------------------------------- 67 Figure 3. Heat map and Kmeans cluster of 117 basal level genes-------68 Figure 4. Cellular component of 117 basal level genes------------------- 69 Figure 5. Biological process of 117 basal level genes-------------------- 70 Figure 6. Hierarchical cluster of 656 cisplatin responsive gens--------- 71 Figure 7. Cellular component of 218 cisplatin responsive genes ------- 72 Figure 8. Biological process of 218 cisplatin responsive genes--------- 73 Figure 9A. sequential model of paralleled correlation-------------------- 74 Figure 9B. sequential model of anti-paralleled correlation--------------- 74 TABEL CONTENT Tabel 1. IC50 of five lung cancer cell lines---------------------------------76 Tabel 2. The 117 selected differential expressed genes at the untreated basal level----------------------------------------- 77 Tabel 3. Responsive genes in H1435 to cisplatin-------------------------- 84 Tabel 4. Comparison between microarray and real-time PCR for the H1435 cisplatin treated samples------------------- 96

    American Society of Clinical Oncology. Clinical practice guidelines for the treatment of unresectable non-small-cell lung cancer. Journal of Clinical Oncology 1997; 15: 2996-3018.
    Al-Shahrour, F., Díaz-Uriarte, R. & Dopazo, J. FatiGO: a web tool for finding significant associations of Gene Ontology terms to groups of genes. Bioinformatics. 2004; 20: 578-580.
    Appella E and Anderson CW. Post-translational modifications and activation of p53 by genotoxic stresses. Eur J Biochem. 2001; 268: 2764–2772.
    Arany I, Safirstein RL. Cisplatin nephrotoxicity. Semin Nephrol 2003; 23(5): 460-4.
    Badiee A, Eiken HG, Steen VM, Lovlie R. Evaluation of five different cDNA labeling methods for microarrays using spike controls. BMC Biotechnol. 2003; 3(1):23.
    Bains M. Surgical treatment of lung cancer. Chest. 1991; 10: 826-837.
    Baylin SB, Herman JG, Graff JR, Vertino PM, Issa JP. Alterations in DNA methylation: a fundamental aspect of neoplasia. Adv Cancer Res. 1998; 72: 141-196.
    Berger W, Elbling L, Micksche M. Expression of the major vault protein LRP in human non-small-cell lung cancer cells: activation by short-term exposure to antineoplastic drugs. Int J Cancer. 2000; 15;88(2): 293-300.
    Beer DG, Kardia SLR, Huang CC, Giordano TJ, Levin AM, Misek DE, Lin L, Chen G, Charib TG, Thomas DG, Lizyness ML, Kuick R, Hayasaka S, Taylor JMG, Iannettoni MD, Orringer MB, Hanash S. Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med. 2002; 8: 816-824.
    Bhattacharjee A, Richards WG, Staunton J, Li C, Mont S, Vasa P, Ladd C, Beheshti J, Bueno R, Gillette M, Loda M, Weber G, Mark EJ, Lander ES, Wong W, Johnson BE, Golub TR, Sugarbaker DJ, Meyerson M. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc Natl Acad Sci USA. 2001; 98: 13790-13795.
    Borst P, Evers R, KoolM and Wijnholds J. J. Natl. Cancer Inst. 2000; 92: 1295–1302.
    Brown P O and Botstein D. Exploring the new world of the genome with DNA microarrays. Nature Genet. 1999: 21: 33–37.
    Bullock AN and Fersht AR. Rescuing the function of mutant p53. Nat. Rev. Cancer. 2001; 1: 68–76.
    Bubendorf L, Kolmer M, Kononen J, Koivisto P, Mousses S, Chen Y, Mahlamäki E, Schraml P, Moch H, Willi N, Elkahloun AG, Pretlow TG, Gasser TC, Mihatsch MJ, Sauter G, Kallioniemi OP. Hormone therapy failure in human prostate cancer: analysis by complementary DNA and tissue microarrays. J Ntal Cancer Ins. 1999; 91: 1758-1765.
    Debouck C and Goodfellow P N. DNA microarrays in drug discovery and development . Nature Genet. 1999: 21: 48 – 50.
    Chakravarti, A. Population genetics--making sense out of sequence. Nature Genet. 1999; 21: 56-60.
    Chaney SG, Sancar A. DNA repair: enzymatic mechanisms and relevant to drug response. J Natl Cancer Inst. 1996; 88: 1346-1360.
    Chen CJ, Wu HY, Chuang YC, Chang AS, Luh KT, Chao HH, Chen KY, Chen SG, Lai GM, Huang HH, and Lee HH. Epidemiological characteristics and multiple risk factors of lung cancer in Taiwan. Anticancer Res. 1990;10: 971-976.
    Chen JJW, Peck K, Hong TM, Yang SC, Sher YP, Shih JY, Wu R, Cheng JL, Roffler SR, Wu CW, Yang PC. Global analysis of gene expression in invasion by a lung cancer model. Cancer Res. 2001; 61: 5223-5230.
    Cheung, V.G. et al. Making and reading microarrays. Nature Genet. 1999; 21: 15-19.
    Choi SW, Park SW, Lee KY, Kim KM, Chung YJ. Fractional allelic l oss in gastric carcinoma correlates with growth patterns. Oncogene. 1998; 17: 2655-2659.
    Comess KM, Burstyn JN, Essigmann JM, Lippard SJ. (1992) Replication inhibition and translesion synthesis on templates containing site-specifically placed cis-diammine Dichloro platinum (II) DNA adducts. Biochemistry.; 31: 3975–90.
    Corda Y, Job C, Anin MF, Leng M, Job D. Transcription by eucaryotic and procaryotic RNA polymerases of DNA modified at a d(GG) or a d(AG) site by the antitumor drug cis-diamminedichloroplatinum(II). Biochemistry 1991;30: 222–30.
    Coste F, Malinge J-M, Serre L, Shepard W, Roth M, Leng M, Zelwer C. Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 Å resolution: hydration at the platinated site. Nucleic Acids Res. 1999; 27: 1837–46.
    Cubeddu LX, O'Connor DT and Parmer RJ. Plasma chromogranin A: a marker of serotonin release and of emesis associated with cisplatin chemotherapy. J Clin Oncol 1995; 13, 681-687.
    Cui H, Horon IL, Ohlsson R, Hamilton SR, Feinberg AP. Loss of imprinting in normal tissue of colorectal cancer patients with microsatellite instability. Nat Med. 1998; 4: 1276-1280.
    Damia G, Filiberti L, Vikhanskaya F, Carrassa L, Taya Y, D’Incalci M and Broggini M. Cisplatinum and taxol induce different patterns of p53 phosphorylation. Neoplasia 2001; 3: 10–16.
    Dan S, Tsunoda T, Kitahara O, Yanagawa R, Zembutsu H, Katagiri T, Yamazaki K, Nakamura Y, Yamori T. An integrated database of chemosensitivity to 55 anticancer drugs and gene expression profiles of 39 human cancer cell lines. Cancer Res. 2002; 62: 1139-1147.
    D D L Bowtell. Options available — from start to finish — for obtaining expression data by microarray. Nature Genet. 1999: 21: 25 – 32.
    Delmastro DA, Li J, Vaisman A, Solle M and Chaney SG. DNA damage inducible-gene expression following platinum treatment in human ovarian carcinoma cell lines. Cancer Chemother. Pharmacol. 1997; 39: 245–253.
    D E Bassett Jr, M B Eisen and M S Boguski. Gene expression informatics —it's all in your mine. Nature Genet. 1999; 21: 51 - 55
    Department of Health, The executive Yuan, Republic of China. General Health Statistics, 2000. In: Health and Vital Statistics, Republic of China. R. O. C. Press, Taipei, pp. 87-112, 2000.
    DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, Chen Y, Su YA and Trent JM. Use of a cDNA microarray to analyze gene expression patterns in human cancer. Nature Genet. 1996; 14: 457-460
    DeRisi JL, Iyer VR, Brown PO. Related Articles, Links Exploring the metabolic and genetic control of gene expression on a genomic scale Science. 1997; 278(5338):680-6.
    De Smet C, Lurquin C, Lethe B, Martelange B, Boon T. DNA methylation is the primary silencing mechanism for a set of germ line- and tumor-specific gene with a CpG-rich promoter. Mol Cell Biol. 1999; 19: 7327-7335.
    Duggan, D.J., Bittner, M., Chen, Y., Meltzer, P. & Trent, J. Expression profiling using cDNA microarrays. Nature Genet. 1999; 21: 10-14.
    Eisen, M. B. & Brown, P. O. DNA arrays for analysis of gene expression. Methods Enzymol. 1999; 303: 179-205 .
    Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 1998. 90: 2690-2694.
    El-Deiry WS, Tokino T, Velculescu VE, Levy DB, Parsons R, Trent JM, Lin D, Mercer WE, Kinzler KW, Vogelstein B. WAF1, a potential mediator of p53 tumor suppression. Cell. 1993; 75: 817-825.
    ESMO Guildelines Task Force. ESMO minimum clinical recommendations for diagnosis, treatment and follow-up of non-small-cell lung cancer (NSCLC). Ann Oncol. 2001; 12: 1049-1050.
    Esteller M, Garcia-Foncillas J, Andion E, et al. Inactivation of he DNA- repair gene MGMT and the clinical response of gliomas to alkylating agents. N Engl J Med. 2000; 343:1350-4].
    E Southern, K Mir and M Shchepinov. Molecular interactions on microarrays. Nature Genet; 1999; 21: 5 – 9.
    Farjo R, Yu J, Othman MI, Yoshida S, Sheth S, Glaser T, Baehr W, and Swaroop A. Mouse eye gene microarrays for investigating ocular development and disease. Vision Res 2002; 42: 463-70.
    Fearon ER. Human cancer syndromes: clues to the origin and nature of cancer. Science. 1997; 278: 1043-1050.
    FitzGerald TJ, Santucci MA, Das I, Kase K, Pierce JH, Greenberger JS. The v-abl, c-fms, or v-myc oncogene induces gamma radiation resistance of hematopoietic progenitor cell line at clinical low dose rate. Int J Radiat Oncol Biol Phys. 1991; 21: 1203-1210.
    Gallo O, Boddi V, Calzolari A, Simonetti L, Trovati M, Bianchi S. bcl-2 protein expression correlates with recurrence and survival in early stage head and neck cancer treated by radiotherapy. Clin Cancer Res. 19962: 261-267.
    Girard L, Zöchbauer-Müller S, Virmani AK, Gazdar AF, and Minna JD. Genome-side allelotyping of lung cancer identifies new regions of allelic loss, differences between small cell lung cancer and non-small cell lung cancer, and loci clustering. Cancer Res. 2000; 60: 4894-4906.
    Glazer AN, Peck K and Mathies RA: A stable double-stranded DNA-ethidium homodimer complex: application to picogram fluorescence detection of DNA in agarose gels. Proc. Natl. Acad. Sci. USA. 1990; 87: 3851-3855.
    Gottlieb TM, Oren M. p53 in growth control and neoplasia. Biochem et Biophy Acta. 1996; 1287: 77-102.
    Gottesman MM, Pastan I, Ambudkar SV. P-glycoprotein and multidrug r esistance. Curr Opin Genet Dev. 1996; 6: 610-617.
    Hanna E, Shrieve DC, Ratanatharathorn V, Xia X, Breau R, Suen J, Li S. A novel alternative approach for prediction of radiation response of squamous cell carcinoma of head and neck. Cancer Res. 2001; 61: 2376-2380.
    Harris CC. Structural and function of the p53 tumor suppressor gene: clues for rational cancer therapeutic strategies. J Natl Cancer Inst. 1996; 88: 1442-1455.
    Hegde P, Qi R, Gaspard R, Abernathy K, Dharap S, Earle-Hughes J, Gay C, Nwokekeh NU, Chen T, Saeed AI, Sharov V, Lee NH, Yeatman TJ, Quackenbush J. Identification of tumor markers in models of human colorectal cancer using a 19,200-element complementary DNA microarray. Cancer Res. 2001; 61(21): 7792-7.
    Heminger K, Hartson SD, Rogers J, Matts RL. Cisplatin inhibits protein synthesis in rabbit reticulocyte lysate by causing an arrest in elongation. Arch Biochem Biophys 1997; 344: 200–7.
    Hermeking H, Lengauer C, Polyak K, He TC, Zhang L, Thiagalingam S, Kinzler KW, Vogelstein B. 14-3-3 sigma is a p53-regulated inhibitor of G2/M progression. Mol Cell. 1997; 1: 3-11.
    Hershberger PA, McGuire TF, Yu WD, Zuhowski EG, Schellens JH, Egorin MJ, Trump DL and Johnson CS. Cisplatin potentiates 1,25- dihydroxyvitamin D3-induced apoptosis in association with increased mitogen-activated protein kinase kinase kinase 1 (MEKK-1) expression. Mol. Cancer Ther. 2002; 1:821–829.
    Hishikawa Y, Abe S, Kinugasa S, Yoshimura H, Monden N, Igarashi M, Tachibana M, Nagasue N. Overexpression of metallothionein correlates with chemoresistance to cisplatin and prognosis in esophageal cancer. Oncology. 1997; 54: 342-347.
    Innocente SA, Abrahamson JL, Cogswell JP, Lee JM. p53 regulates a G2 checkpoint through cyclin B1. Proc Natl Acad Sci USA. 1999; 96: 2147-2152.
    Iyer, V. R., Eisen, M. B., Ross, D. T., Schuler, G., Moore, T., Lee, J. C. F., Trent, J. M., Staudt, L. M., Hudson, J., Jr., Boguski, M. S. The transcriptional program in the response of human fibroblasts to Serum. Science. 1999; 283:83-87.
    Johannes G, Carter M S., Eisen M B., Brown P O., and Sarnow P. Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray. Proc Natl Acad Sci U S A. 1999; 96 (23): 13118–13123
    Jayaraman L, Moorthy NC, Murthy KG, Manley JL, Bustin M and Prives C. High mobility group protein-1 (HMG-1) is a unique activator of p53. Genes Dev. 1998; 12: 462–472.
    J G Hacia. Resequencing and mutational analysis using oligonucleotide microarrays. Nature Genet. 1999: 21: 42 – 47.
    Jordan P, Carmo-Fonseca M. Cisplatin inhibits synthesis of ribosomal RNA in vivo. Nucleic Acids Res1998; 26:2831–6.
    Jones PA, Laird PW. Cancer epigenetic comes of age. Nature Genet. 1 999; 21: 163-167.
    K A Cole, D B Krizman and M R Emmert–Buck. The genetics of cancer—a 3D models. Nature Genet. 1999: 21: 38 – 41.
    Kadota K, Miki R, Bono H, Shimizu K, Okazaki Y, Hayashizaki Y. Preprocessing implementation for microarray (PRIM): an efficient method for processing cDNA microarray data. Physiol Genomics. 2001; 4(3):183-8.
    Kastan MB, Zhan Q, El-Deiry WS, Carrier F, Jacks T, Walsh WV, Plunkett BS, Vogelstein B, Fornace AJ Jr. A mammalian cell cycle checkpoint pathway utilizing p53 and GADD45 is defective in ataxia-telangiectasia. Cell. 1992; 71: 587-597.
    Kazuya Kudoh, Manasi Ramanna, Roald Ravatn, Abdel G. Elkahloun, Michael L. Bittner, Paul S. Meltzer, Jeffrey M. Trent, William S. Dalton, and Khew-Voon Chin. Monitoring the Expression Profiles of Doxorubicin-induced and Doxorubicin-resistant Cancer Cells by cDNA Microarray. Cancer Res. 2000; 60: 4161-4166.
    Kitahara O, Furukawa Y, Tanaka T, Kihara C, Ono K, Yanagawa R, Nita ME, Takagi T, Nakamura Y, Tsunoda T. Alterations of gene expression during colorectal carcinogenesis revealed by cDNA microarrays after Laser-Capture microdissection of tumor tissues and normal epithelia. Cancer Res. 2001; 61: 3544-3549.
    Lipshutz, R.J., Fodor, S.P.A., Gingeras, T.R., and Lockhart, D.J. High density synthetic oligonucleotide arrays. Nature Genet. 1999; 21: 20-24.
    Ljubimova JY, Lakhter AJ, Loksh A, Yong WH, Riedinger MS, Miner JH, Sorokin LM, Ljubimov AV, Black KL. Overexpression of alpha4 chain-containing laminins in human glial tumors identified by gene microarray analysis. Cancer Res. 2001; 61: 5601-5610.
    Loe DW, Deeley RG, Cole SP. Biology of the multidrug resistance-associated protein, MRP. Eur J Cancer. 1996; 34A: 945-957.
    Lyng H, Badiee A, Svendsrud DH, Hovig E, Myklebost O, Stokke T. Profound influence of microarray scanner characteristics on gene expression ratios: analysis and procedure for correction. BMC Genomics. 2004 ; 5(1): 10.
    Lønning PE, Sørlie T, Perou CM, Brown PO, Botstein D, Børresen-Dale A-L. Microarrays in primary breast cancer-lessons from chemotherapy studies. Endocrine-Related Cancer. 2001; 8: 259-263.
    Mackey TJ, Borkowski A, Amin P, Jacobs SC, Kyprianou N. bcl-2/bax ratio as a predictive marker for therapeutic response to radiotherapy in patients with prostate cancer. Urology. 1998p; 52: 1085-1090.
    Malinge J-M, Perez C, Leng M. Base sequence-independent distorsions induced by interstrand cross-links in cisdiammine-dichloro- platinum (II)-modified DNA. Nucleic Acids Res. 1994; 22: 3834–9.
    Malinge J-M, Giraud-Panis M-J, Leng M. Interstrand cross-links of cisplatin induce striking distortions in DNA. J Inorg Biochem 1999; 77: 23–9.
    Martin KJ, Kritzman BM, Price LM, Koh B, Kwan CP, Zhang X, Mackay A, O’Hare MJ, Kaelin CM, Mutter GL, Pardee AB, Sager R. Linking gene expression patterns to therapeutic groups in breast cancer. Cancer Res. 2000; 60: 2232-2238.
    Maskos U, Southern EM. Oligonucleotide hybridizations on glass supports: a novel linker for oligonucleotide synthesis and hybridization properties of oligonucleotides synthesised in situ. Nucleic Acids Res. 1992 ;20(7): 1679-84.
    Merouani, A., Shpall, E.J., Jones, R.B., Archer, P.G., & Schrier, R.W.. Renal function in high dose chemotherapy and autologous hematopoietic cell support treatment for breast cancer. Kidney Int. 1996; 50, 1026-1031
    Minna JD, Sekido Y, Fong K, and Gazdar AF. In: Cancer: Principles and Practice of Oncology, 5th edit. Devita Jr VT, Hellman S, and Rosenberg SA (eds). Lippincott: Philadelphia. 1997; 849-857.
    Miller AC, Kariko K, Myers CE, Clark EP, Smid D. Increased redioresistance of ras-transformed human osteosarcoma cells and its modulation by lovastatin, an inhibitor of p21ras iosprenylation. Int J Cancer. 1993; 53: 302-307.
    Miyashita T, Reed JC. Tumor suppressor p53 is a direct transcriptional activator of the human bax gene. Cell. 1995; 80: 293-299.
    Morgan SE and KastanMB. p53 and ATM: cell cycle, cell death, and cancer. Adv. Cancer Res. (1997); 71: 1–25.
    Mummaneni P, Walker KA, Bishop PL, Turker MS. Epigenetic gene inactivation induced by a cis-acting methylation center. J Biol Chem. 1995; 270: 788-792.
    Nakamura. Prediction of Sensitivity of Esophageal Tumors to Adjuvant Chemotherapy by cDNA Microarray Analysis of Gene-Expression Profiles. Cancer Res. 2001; 61: 6474–6479.
    Non-Small Cell Lung Cancer Collaborative Group. Chemotherapy in non-small cell lung cancer using updated data on individual patients from 52 randomised clinical trials. Br Med J 1995; 311: 899–909
    Parikh CR, McSweeney PA, Korular D, Ecder T, Merouani A, Taylor J, Slat-Vasquez V, Shpall EJ, Jones RB, Bearman SI, Schrier RW.. Renal dysfunction in allogeneic hematopoietic cell transplantation. Kidney Int. 2002; 62, 566-573
    Peck K, Stryer L, Glazer AN and Mathies RA: Single-molecule fluorescence detection: autocorrelation criterion and experimental realization with phycoerythrin. Proc. Natl. Acad, Sci. USA. 1989; 86: 4087-4091.
    Persons DL, Yazlovitskaya EM and Pelling JC. Effect of extracellular signal-regulated kinase on p53 accumulation in response to cisplatin. J. Biol. Chem. 2000; 275: 35778–35785.
    Rajewsky MF, Mu¨ ller R. DNA repair and the cell cycle as targets
    in cancer therapy. In: Alison MR, editor. The cancer handbook.
    London: Nature Publishing Group. 2002; 1507-19.
    Ramsay G. DNA chips: state-of-the art. Nature Biotech. 1998; 16: 40-44.
    Risch NJ. Searching for genetic determinants in the new millennium. Nature. 2000; 405(6788): 847-56.
    Rosell R, Gomez-Codina J, Camps C, Maestre J, Padille J, Canto A, Mate JL, Li S, Roig J, Olazabal A. A randomized trial comparing preoperative chemotherapy plus surgery with surgery alone in patients with non-small-cell lung cancer. New Engl J Med. 1994; 330: 153-158.
    Schena M, Heller RA, Theriault TP, Konrad K, Lachenmeier E, Davis RW. Microarrays: biotechnology’s discovery platform for functional genomics. Ophthalmic Genet, 16: 301-306, 1998.
    Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P, Iyer V, Jeffrey SS., Van de Rijn M, Waltham M, Pergamenschikov A, Lee JCF, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO. Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet. 2000; 24: 227-235.
    Sakamoto M, Kondo A, Kawasaki K, Goto T, Sakamoto H, Miyake K, Koyamatsu Y, Akiya T, Iwabuchi H, Muroya T, Ochiai K, Tanaka T, Kikuchi Y, and Tenjin Y. Analysis of gene expression profiles associated with cisplatin resistance in human ovarian cancer cell lines and tissues using cDNA microarray. Hum Cell. 2001; 14(4): 305-15.
    Sato P, Rosenberg J. Cisplatin inhibition of translation. Curr Topics Mol Pharmacol.; 1: 75–96.
    Schena M, Shalon D, Davis RW and Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995; 270: 467-470.
    Scherf U, Ross DT, Waltham M, Smith LH, Lee JK, Tanabe L, Kohn KW, Reinhold WC, Myers TG, Andrews DT, Scudiero DA, Eisen MB, Sausville EA, Pommier Y, Botstein D, Brown PO, and Weinstein JN. A gene expression database for the molecular pharmacology of cancer. Nat Genet. 2000; 24(3): 208-9, 236-44.
    Shen CY, Yu JC, Lo YL, Kuo CH, Yue CT, Jou YS, Huang CS, Lung JC, Wu CW. Genome-wide search for loss of heterozygosity using laser capture microdissected tissue of breast carcinoma: an implication for mutator phenotype and breast cancer pathogenesis. Cancer Res. 2000; 60: 3884-3892.
    Shieh SY, Ahn J, Tamai K, Taya Y and Prives C. The human homologs of checkpoint kinases Chk1 and Cds1 (Chk2) phosphorylate p53 at multiple DNA damage-inducible sites. Genes Dev. 2000; 14: 289–300. Suo Z, Lippard SJ, Johnson KA. Single d(GpG) cis-diammine -platinum(II) adduct-induced inhibition of DNA polymerization. Biochemistry 1999; 38: 715–26.
    Shiraishi M, Noguchi M, Shimosato Y, Sekiya T. Amplification of protooncogenes in surgical specimens of human lung carcinomas. Cancer Res. 1989; 49: 6474-6479.
    Sotiriou C, Powles TJ, Dowsett M, Jazaeri AA, Feldman AL, Assersohn L, Gadisetti C, Libutti SK, Liu ET. Gene expression profiles derived from fine needle aspiration correlate with response to systemic chemotherapy in breast cancer. Breast Cancer Res. 2002; 4: R3.
    Staunton JE, Slonim DK, Coller HA, Tamayo P, Angelo MJ, Park J, Scherf U, Lee JK, Reinhold WO, Weinstein JN, Mesirov JP, Lander ES, Golub TR. Chemosensitivity prediction by transcriptional profiling. Proc Natl Acad Sci USA. 2001; 98: 10787-10792.
    Sugita M, Geraci M, Gao B, Powell RL, Hirsch FR, Johnson G, Lapadat R, Gabrielson E, Bremnes R, Bunn PA, Franklin WA. Combined use of oligonucleotide and tissue microarrays identifies cancer/testis antigen as biomarkers in lung carcinoma. Cancer Res. 2002; 62: 3971-3979.
    Szymkowski DE, Yarema K, Essigmann JM, Lippard SJ, Wood RD. An intrastrand d(GpG) platinum crosslink in duplex M13 DNA is refractory to repair by human cell extracts. Proc Natl Acad Sci U S A 1992; 89: 10772–6.
    Takahara PM, Frederick CA, Lippard SJ. Crystal structure of the anticancer drug cisplatin bound to duplex DNA. J Am Chem Soc 1996; 118: 12309–21.
    Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA. 1999; 96: 2907-2912.
    Tanaka H, Arakawa H, Yamaguchi T, Shiraishi K, Fukuda S, Matsui K, Takei Y, Nakamura Y. A ribonucleotide reductase gene involved in a p53-dependent cell-cycle checkpoint for DNA damage. Nature. 2000; 404: 42-49.
    Taylor WR, DePrimo SE, Agarwal A, Agarwal ML, Schonthal AH, Katula KS, Stark GR. Mechanisms of G2 arrest in response to overexpression of p53. Mol Biol Cell. 1999; 10: 3607-3622.
    Taylor WR, Stark GR. Regulation of the G2/M transition by p53. Oncogene. 2001; 20: 1803-1815.
    Terence P. Speed, Yee Hwa Yang, Michael J. Buckley, and Sandrine Dudoit. Comparsion of methods for image analysis on cDNA microarray data. Technical reports. 2000; 584: 1-40.
    Travis WD, Lubin J, Ries L, Devesa S. United States lung carcinoma incidence trends. Cancer. 1996; 77: 2464-2470.
    Tsai CM, Chang KT, Wu LH, Chen JY, Gazdar AF, Mitsudomi T, Chen MH, Perng RP. Correlations between intrinsic chemoresistance and HER-2/neu gene expression, p53 gene mutations, and cell proliferation characteristics in non-small cell lung cancer cell lines. Cancer Res. 1996; 56: 206-209.
    Van de Vijver MJ, He YD, Van ‘t Veer LJ, Dai H, Hart AAM, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, Parrish M, Atsma D, Witteveen A, Glas A, Delahaye L, Van der Velde T, Bartelink H, Rodenhuis S, Rutgers ET, Friend SH, Bernards R. A gene-expression signature as a predictor of survival in breast cancer. New Engl J Med. 2002; 347: 1999-2009.
    Van ‘t Veer LJ, Dai H, Van de Vijver MJ, He YD, Hart AAM, Mao M, Peterse HL, Van der Kooy K, Marton MJ, Witteveen AT, Schreiber GJ, Kerkhoven RM, Roberts C, Linsley PS, Bernards R, Friend SH. Gene expression profiling predicts clinical outcome of breast cancer. Nature. 2002; 415: 530-536.
    Velculescu VE and El-Deiry WS. Biological and clinical importance of the p53 tumor suppressor gene. Clin Chem. 1996; 42: 858-868.
    Vichi P, Coin F, Renaud J-P, Vermeulen W, Hoeijmakers JHJ, Moras D, Egly J-M. (1997) Cisplatin- and UV- damaged DNA lure the basal transcription factor TFII/TBP. EMBO J. 1993; 16: 7444–56.
    Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 2002; 30(4): e15.
    Waga S, Hannon GJ, Beach D, Stillman B. The p21 inhibitor of cyclin-dependence kinases controls DNA replication by interaction with PCNA. Nature. 1994; 369: 574-578.
    Wagner H Jr, Lad T, Piantadosi S, Ruckdeschel JC. Randomized phase II evaluation of preoperative radiation therapy and preoperative chemotherapy with mitomycin, vinblastine, and cisplatin in patients with technically unresectable stage IIIA and IIIB non-small cell cancer of the lung. Chest. 1994; 106: 348S-354S.
    Wang T, Hopkins D, Schmidt C, Silva S, Houghton R, Takita H, Repasky E, Reed SG. Identification of genes differentially over-expressed in lung squamous cell carcinoma using combination of cDNA subtraction and microarray analysis. Oncogene. 2000; 19: 1519-1528.
    Wang WG, Marsh S, Cassidy J, and Howard L. Pharmacogenomic dissection of resistance to thymidylate synthase inhibitors, Cancer Res. 2001; 61: 5505–5510.
    Weller M, Malipiero U, Aguzzi A, Reed JC, Fontana A. Protooncogene bcl-2 gene transfer abrogates Fas/APO-1 antibody-mediated apoptosis of human malignant glioma cells and confers resistance to chemo- therapeutic drugs and therapeutic irradiation. J Clin Investig. 1995; 95: 2633-2643.
    Welsh JB, Zarrinkar PP, Sapinoso LM, Kern SG, Behling CA, Monk BJ, Lockhart DJ, Burger RA, Hampton GM. Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer. Proc Natl Acad Sci USA. 2001; 98: 1176-1181.
    West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, Zuzan H, Olson JA Jr, Marks JR, Nevins JR. Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci USA. 2001; 98: 11462-11467.
    Yu J, Othman MI, Farjo R, Zareparsi S, MacNee SP, Yoshida S, Swaroop A. Evaluation and optimization of procedures for target labeling and hybridization of cDNA microarrays. Mol Vis. 2002; 8: 130-137.
    Zhao H and Piwnica-Worms H. ATR-mediated checkpoint pathways regulate phosphorylation and activation of human Chk1. Mol. Cell. Biol. 2001; 21: 4129–4139.

    下載圖示
    QR CODE