研究生: |
蔡思怡 Sz-Yi Tsai |
---|---|
論文名稱: |
台灣產車前車石龍尾屬之分類研究 A Taxonomic Study of Limnophila (Scrophulariaceae) of Taiwan |
指導教授: |
王震哲
Wang, Jenn-Che |
學位類別: |
碩士 Master |
系所名稱: |
生命科學系 Department of Life Science |
論文出版年: | 2013 |
畢業學年度: | 101 |
語文別: | 中文 |
論文頁數: | 162 |
中文關鍵詞: | 水生植物 、石龍尾 、車前科 、分類研究 、分子親緣關係 |
英文關鍵詞: | Aquatic plants, Limnophila, Plantaginaceae, Taxonomy, Phylogeny |
論文種類: | 學術論文 |
相關次數: | 點閱:299 下載:5 |
分享至: |
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報 |
本研究利用外部形態、種子與花粉微細形態及分子親緣關係等資料,進行台灣產石龍尾屬(Limnophila)植物之分類研究。結果認為台灣共產11種石龍尾,其中重新界定無柄花石龍尾(L. sessiliflora)並確認其在台灣歸化,並從中分出新種東方石龍尾(L. orientalis sp. nov.)為台灣原生種,另再確認石龍尾(L. trichophylla)之學名正確性而分出新種絲葉石龍尾(L. taiwanensis sp. nov.),另有新種屏東石龍尾(L. pingtungensis sp. nov.)。外部形態上,葉脈、葉形、萼片、蒴果等為石龍尾屬植物的重要分類特徵,另外種子表面微細形態在節間與少數種間具差異,支持節的歸群,亦可作為分類鑑定之參考。分子研究取樣台灣產與部分國外材料共19種,外群選擇Gratiola和車前屬(Plantago)做為外群,並使用葉綠體DNA之trnL-F、trnG、ndhF序列進行本屬之親緣關係研究,合併各片段後得到總資料矩陣共3,677 bp。親緣關係樹顯示台灣產石龍尾屬可分為三大支系,此三大支系與沉水裂葉有無、葉脈平行脈或羽狀脈及蒴果成熟時萼片具條紋與否等特徵一致,支持前人研究建立之Limnophila節、Striatae節為支持度極高的單系群,而前人置於Integrifolieae節之L. fragrans則與Striatae節形成姊妹群,應排除於Integrifolieae節之外。
The genus Limnophila (Plantaginaceae) in Taiwan is taxonomically revised based on morphological, palynological, and molecular biological studies. The result shows that 11 species of this genus are indigenous to Taiwan, which include 3 new species, L. pintungensis sp. nov., L. taiwanensis sp. nov. and L. orientalis sp. nov. The new species L. orientalis is divided from the re-circumscribed L. sessiliflora which is also confirmed here to be a newly naturalized species in Taiwan. The new species L. taiwanensis sp. nov. which was considered as L. trichophylla before is extracted from the re-recognized L. trichophylla.
The morphology of venation, leaf shape, calyx, and capsule are the important characters for the classification of Taiwanese genus. Furthermore, the seed surfaces also provide evidences for distinguishing sections and some species. Finally, the phylogenetic relationship within this genus was studied using the cpDNA markers trnL/F, trnG, and ndhF from 19 species sampled in Taiwan and neighboring area. Gratiola and Sesamum are chosen as outgroups. The cladogram of molecular phylogeny revealed three separate lineages corresponding to the sectional grouping of previous studies and could be distinguished by the finely dissected submerged leaves, venation, and calyx striation on mature fruits. The section Limnophila and section Striatae are highly supported monophyletic groups, but section Integrifolieae shows paraphyly.
金存禮。1979。〈石龍尾屬〉,中國植物志。北京:科學出版社。頁103–113。
林春吉。2005。台灣的水生與濕地植物。宜蘭:綠世界。頁130–134。
林春吉。2009。臺灣水生與濕地植物生態大圖鑑(中)。台北:天下遠見。頁60–81。
陳擎霞。1987。桃園池沼地區水生植物生態研究(二)。台北:行政院農業委員會。頁4–5、圖13–14。
楊遠波、顏聖紘、林仲剛。2001。臺灣水生植物圖誌。台北:行政院農業委員會。頁88–94。
謝宗欣。2005。臺灣玄參科系統分類學研究。行政院國家科學委員會專題研究計畫成果報告。NSC93-2311-B-024-001-。
魏甫錦。2001。種子影像資料庫之建構與系統分析。台北:國立台灣大學農藝學研究所碩士論文。
Albach, D. C., H. M. Meudt, and B. Oxelman. 2005. Piecing together the “new” Plantaginaceae. Amer. J. Bot. 92: 297–315.
A.P.G. III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 161: 105–121.
Archie, J. W. 1989. Homoplasy excess ratios: new indices for measuring levels of homoplasy in phylogenetic systematics and a critique of the consistency index. Syst. Zool. 38: 253–269.
Backer, C. A. and Bakhuizen van den Brink, R. C. 1965. Flora of Java, Vol. II. Groningen: P. Noordhoff. pp. 505–506.
Bentham, G. 1835. Stemodia, Limnophila. In: Scrophulariaceae Indicae: a synopsis of the east Indian Scrophulariaceae. London: James Ridgway and Sons, Piccadilly. pp. 22–26.
Bentham, G. 1846. Scrophulariaceae. In: De Candolle (ed.), A. Prodromus Systematis Naturalis Regni Vegetabilis. Vol. X. Paris: Masson. pp. 386–391.
Boerlage, J. G. 1899. Scrophulariaceae. In: Handleiding tot de kennis der flora van Nederlandsch Indie, Vol. II. Dicotyledones Gamopetalae. Leiden: E. J. Brill. pp. 538–542.
Bremer, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795–803.
Brown, R. 1810. Scrophularinae. In: Prodromus florae Novae Hollandiae et Insulae Van-Diemen. Norimbergae: Sumtibus L. Schrag. p. 442.
Camp, W. H., H. W. Rickett, and C. A. Weatherby. 1947. International rules of botanical nomenclature. Brittonia 6: 85.
Cavalcanti, T.B. and Rua, G.H. 2008. Inflorescence patterns in the woody Brazilian genus Diplusodon (Lythraceae). Flora: Morphology, Distribution, Functional Ecology of Plants 203: 261–271.
Don, G. 1837. Scrophularineae. In: A general history of the dichlamydeous plants. London: J. G. and F. Rivington etc. pp. 542–544.
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792–1797.
Erdtman, G. 1952. Pollen morphology and plant taxonomy, angiosperms. Stockholm: Almqvist and Wiksells. pp. 50–51.
Estes, D. and R. L. Small. 2008. Phylogenetic relationships of the monotypic genus Amphianthus (Plantaginaceae tribe Gratioleae) inferred from chloroplast DNA sequences. Syst. Bot. 33: 176–182.
Farris, J. S., M. Kallersjo, A. G. Kluge, and C. Bult. 1994. Testing significance of incongruence. Cladistics 10: 315–319.
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
Forbes, F. B. and W. B. Hemsley. 1890. An enumeration of all the plants known from China Proper, Formosa, Hainan, Corea, the Luchu Archipelago, and the Island of Hongkong, together with their distribution and synonymy.—Part VII. J. Linn. Soc., Bot. 26: 185–186.
Goloboff, P. A., J. S. Farris, and K. C. Nixon. 2008. TNT: A free program for phylogenetic analysis. Cladistics 24: 774–786.
Hall, T. A. 1999. Bioedit: a user-friendly biological sequence aliment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41: 95–98.
Hasegawa , M., H. Kishino, and T. Yano. 1985. Dating of human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160–174.
Hayata, B. 1920. Icones plantarum Formosanarum Vol. IX. Taihoku (Taipei): Bureau of Forestry. pp. 76–77.
Henry, A. 1896. A list of plants from Formosa. Trans. Asiatic Soc. Japan. 24 (suppl.):76.
Hong, D. Y., H. B. Yang, C. L. Jin, and N. H. Holmgren. 1998. Scrophulariaceae. In: Z. Y. Wu and P. H. Raven (eds.), Flora of China, Vol. 18. Saint Louis: Missouri Botanical Garden Press. pp. 26–28.
Hooker, J. D. 1884. Scrophularineae. In: Flora of British India. Vol. IV. London: L. Reeve & Co. pp. 265–273.
Hsu, T. C. and S. W. Chung. 2009. Two newly discovered plants in Taiwan. Taiwania 54: 403–407.
Huelsenbeck, J. P. and F. Ronquist. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754–755.
Komarov, V. L. 1901. Species novae florae Asiae Orientalis (Manshuriae et Koreae borealis). Acta Hort. Petrop. 18: 429–430.
Komarov, V. L. 1907. Flora Manshuriae, Vol. III. Trudy Imp. S.-Peterburgsk. Bot. Sada 25: 421.
Lohmann, L.G., 2006. Untangling the phylogeny of neotropical lianas (Bignonieae, Bignoniaceae). Amer. J. Bot. 93: 304–318.
Li, H. L. 1950. Studies in the Scrophulariaceae of Taiwan. Quart. J. Taiwan Mus. 3: 60–61.
Li, H. L. 1964. Limnophila (Scrophulariaceae) in China. Bot. Bull. Acad. Sin. 5: 113–119.
Li, H. L. 1978. Limnophila (Scrophulariaceae). In: H. L. Li et al. (eds.), Flora of Taiwan, Vol. IV. Taipei: Epoch Publishing Co., Ltd. pp. 566–570.
Liu, H. Y. 1998. Limnophila (Scrophulariaceae). In: T. C. Huang et al. (eds.), Flora of Taiwan, ed. 2, Vol. IV. Taipei: Editorial Committee of the Flora of Taiwan. pp. 599–603.
Loiseau, J. E. 1965. Anisocladie hélicoïdale et hélices foliaires multiples chez quelques angiospermes. In Travaux Dédiés à L. Plantefol. Paris: Masson. pp. 367–389.
Masamune, G. 1954. A list of vascular plant of Taiwan. Kanazawa: Hokurikunoshoku Butzunokai Press. p. 102.
Matsumura, J. and B. Hayata. 1906. Enumeratio plantarum Formosanarum. J. Coll. Sci. Imp. Univ. Tokyo 22: 276–277.
Merrill, E. D. 1917. An interpretation of Rumphius's Herbarium amboinensem. Manila: Bureau of printing. p. 466.
Merrill, E. D. 1923. Enumeration of Philippine flowering plants. Manila: : Bureau of printing. pp. 432–434.
Milne, I., D. Lindner, M. Bayer, D. Husmeier, G. McGuire, D. F. Marshall, and F. Wright. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25: 126–127.
Mori, U. 1936. Limnophila. In G. Masamune (ed.), Short flora of Formosa. Taipei: The Editorial Department of Kudoa. p. 191.
Müller K. 2005. SeqState - primer design and sequence statistics for phylogenetic DNA data sets. Appl. Bioinformatics 4: 65–69.
Murley, M. R. 1951. Seeds of the Cruciferae of Northeastern North America. Am. Midl. Nat. 46: 1–81.
Nemoto, K. 1936. Flora of Japan. Supplement. Tokyo: Shunyodo. pp. 659–660.
Ochse, J. J. 1931. Vegetables of the Dutch East Indies. Java: Dept Agriculture. p. 648.
Olmstead, R. G. and J. A. Sweere. 1994. Combining data in phylogenetic systematics: an empirical approach using three molecular data sets in the Solanaceae. Syst. Biol. 43: 467–481.
Olmstead, R. G. and P. A. Reeves. 1995. Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences. Ann. Missouri Bot. Gard. 82: 176–193.
Olmstead, R. G., C. W. DePamphilis, A. D. Wolfe, N. D. Young, W. J. Elisons, and P. A. Reeves. 2001. Disintegration of the Scrophulariaceae. Amer. J. Bot. 88: 348–361.
Philcox, D. 1967. Two new species of Limnophila R. Br. (Scrophulariaceae). Kew Bull. 21: 157–160.
Philcox, D. 1970. A taxonomic revision of the genus Limnophila R. Br. (Scrophulariaceae). Kew Bull. 24: 101–170.
Rickett, H. W. and F. A. Stafleu. 1960. Nomina generica conservanda et rejicienda spermatophytorum V. Taxon 9: 111.
Ronquist, F. and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(: 1572–1574.
Roxburgh, W. 1832. Didynamia angiospermia. In W. Carey (ed.), Flora Indica. Serampore: Mission Press. pp. 92–93.
Rutishause, R. 1999. Polymerous leaf whorls in vascular plants: developmental morphology and fuzziness of organ identities. Int. J. Plant. Sci. 160(6 Suppl.): S81–S103.
Sasaki S. 1928. List of plants of Formosa. Taipei: Natural History Society of Formosa. pp. 365–367.
Schäferhoff, B., A. Fleischmann, E. Fischer, D. C. Albach, T. Borsch, G. Heubl, and K. F. Müller. 2010. Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences. BMC Evol. Biol. 10: 352.
Shaw, J., E. B. Lickey, J. T. Beck, S. B. Farmer, W. S. Liu, J. Miller, K. C. Siripun, C. T. Winder, E. E. Schilling, R. L. Small. 2005. The tortoise and the hare II: Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Amer. J. Bot. 92: 142–166.
Schaeppi, H. 1935. Untersuchungen über die Blattentwicklung bei Ceratophyllum, Cabomba und Limnophila. Planta 24: 755–769.
Sculthorpe, C. D. 1966. The biology of aquatic vascular plants. London: Edward Arnold. p. 106.
Sorenson, M. D. 1999. TreeRot, version 2. Boston University, Boston, MA.
Swofford, D. L. 1998. PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sunderland: Sinauer,. (computer software).
Systematics Association Committee for Descriptive Terminology. 1962. Terminology of simple symmetrical plane shapes. Taxon 11: 145–156, 245–247.
Taberlet, P., L. Gielly, G. Pautou, and J. Bouvet. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Mol. Biol. 17: 1105–1109.
Thankachi, S. S. M. and N. O. Kumari. 1998. Pollen morphological studies in the genus Limnophila Br. (Scrophulariaceae). J. Palyno. 34: 99–109.
Wannan, B. S. and J. T. Waterhouse. 1985. A Taxonomic Revision of the Australian Species of Limnophila R. Br. (Scrophulariaceae). Austral. J. Bot. 33: 367–380.
Yamamoto, Y. 1934. Observationes ad Floram Formosanam X. J. Soc. Trop. Agric. 6: 560.
Yamazaki, T. 1968. On Limnophila trichophylla. J. Jap. Bot. 43: 504.
Yamazaki, T. 1978. On Limnophila aromatica (Lam.) Merr. and L. chinensis (Osb.). Merr. J. Jap. Bot. 53: 312–313.
Yamazaki, T. 1979. New or noteworthy plants of Scrophulariaceae from Indo-China (3). New taxa of Limnophila. J. Jap. Bot. 54: 15–21.
Yamazaki, T. 1980. New or noteworthy plants of Scrophulariaceae from Indo-China (6). J. Jap. Bot. 55: 328–336.
Yamazaki, T. 1982. Nomenclatural changes and new taxa of some Scrophulariaceous plants in Japan. J. Jap. Bot. 57: 212–215.
Yamazaki, T. 1985. A revision of the genera Limnophila and Torenia from Indochina. J. Fac. Sci. Univ. Tokyo, Sect. 3, Bot. 13: 575–624.
Yamazaki, T. 1993. Limnophila. In: K. Iwatsuki et al. (eds.), Flora of Japan. Vol. IIIa. Tokyo: Kodansha Ltd. pp. 331–333.
Yang, Y. P. 1987. A synopsis of aquatic angiospermous plants of Taiwan. Bot. Bull. Acad. Sin. 28: 191–209.
Yang, Y. P. and S. H. Yen. 1997. Notes on Limnophila (Scrophulariaceae) of Taiwan. Bot. Bull. Acad. Sin. 38: 285–295.
Zwickl, D. J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.