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Author: 葉立恆
Ye, Li-Heng
Thesis Title: RUNX1轉錄調控ISX表現以促進急性淋巴性白血病的增生和獲得幹性的能力
RUNX1 transcriptionally regulates ISX to promote proliferation and acquisition of stemness in acute lymphoblastic leukemia
Advisor: 王麗婷
Wang, Li-Ting
Committee: 王麗婷
Wang, Li-Ting
陳栢均
Chen, Po-Chun
林佩瑾
Lin, Pei-Chin
Approval Date: 2024/07/17
Degree: 碩士
Master
Department: 生命科學系
Department of Life Science
Thesis Publication Year: 2024
Academic Year: 113
Language: 中文
Number of pages: 71
Keywords (in Chinese): B細胞急性淋巴性白血病癌症幹細胞RUNX1ISXGalectin-9
Keywords (in English): BCP-ALL, cancer stem cell, RUNX1, ISX, Galectin-9
Research Methods: 實驗設計法
DOI URL: http://doi.org/10.6345/NTNU202401965
Thesis Type: Academic thesis/ dissertation
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急性淋巴性白血病是兒童最常見的癌症之一,儘管目前治療方法越來越多,但有部分患者的預後仍不佳且易復發,復發原因被推測與癌症幹細胞相關。先前研究已經明瞭 RUNX1 對於造血幹細胞、急性淋巴性白血病及該疾病預後中都扮演重要角色,RUNX1 為轉錄因子,然而對於其作用及機制在急性淋巴性白血病中仍不清楚。急性淋巴性白血病具有不同亞型,多半以何種譜系的增生導致而命名,如 T 細胞或 B 細胞急性淋巴性白血病,本篇則專注在 B 細胞前驅細胞急性淋巴性白血病 (BCP-ALL)。在研究中首先確認患者的預後與 RUNX1 表現量的關係,此外也發現過度表達RUNX1的急性淋巴性白血病細胞會導致細胞增生增加、分泌 Galectin-9 到胞外能力提升及發現在基因層面及蛋白質中 ISX 及幹性相關的表現量也顯著提升,因此透過 Ch-IP 及冷光報導分析發現 RUNX1 藉由結合在 ISX 的啟動子中-40~0序列上。透過靜默 RUNX1 發現 RUNX1 對於ISX、LGALS9、幹性、增生基因表現是必要的。並且利用 RUNX1 以及 ISX shRNA 的細胞轉染驗證 RUNX1 透過 ISX 調控細胞增生能力、惡性程度及 LGALS9 與幹性基因的表達。最終在病人檢體中發現 RUNX1 與 ISX 兩者間具有正相關性,並且觀察到與 RUNX1 高表現預後不佳的情況相同:ISX 高表現病人也預後不佳。

Acute lymphoblastic leukemia (ALL) is a prevalent childhood cancer. Despite advancements in therapy, some patients face a poor prognosis and risks of relapse linked to cancer stem cells. Research highlights RUNX1's pivotal role in hematopoietic stem cells, ALL, and disease prognosis, yet its exact mechanisms remain unclear. ALL encompasses subtypes like T-cell or B-cell ALL, with this study focusing on B-cell precursor acute lymphoblastic leukemia (BCP-ALL). This study initially elucidated the correlation between patient prognosis and RUNX1 expression. Overexpression of RUNX1 increased cell proliferation and elevated ISX, LGALS9, and stemness genes at both transcriptional and protein levels. Ch-IP and luciferase reporter assay pinpointed RUNX1 binding to the -40 to 0 sequence within the ISX promoter. RUNX1 silencing experiments underscored RUNX1's necessity for ISX, LGALS9, stemness, and proliferation gene expression. Transfection with RUNX1 and ISX shRNA substantiated RUNX1's regulatory role via ISX on the aforementioned gene expressions. Finally, a strong positive correlation between RUNX1 and ISX was validated in patient samples, with high ISX expression correlating with a poor prognosis, paralleling findings with high RUNX1 expression.

第壹章 前言 1 第一節 白血病 1 第二節 急性淋巴性白血病 (Acute lymphoblastic leukemia) 2 第三節 癌症幹細胞 (Cancer stem cell) 3 第四節 骨髓微環境 4 第五節 Runt-related transcription factor 1(RUNX1) 5 第六節 Intestine-specific homeobox (ISX) 7 第七節 Galectin-9 (Gal-9) 7 第貳章 研究動機及目的 9 第參章 材料方法 10 第一節 懸浮細胞培養與細胞轉染 (Transfection) 10 第二節 慢病毒轉染(Lentivirus Transfection) 10 第三節 核糖核酸萃取 (RNA Extraction) 11 第四節 西方墨點法 (Western Blot) 11 第五節 即時聚合酶連鎖反應 (RT-qPCR) 12 第六節 染色質免疫沉澱分析法 (Chromatin Immunoprecipitation) 12 第七節 雙冷光素酶報導分析 (Dual-Luciferase Reporter Assays) 13 第八節 酵素免疫結合吸附分析法 (Enzyme-Linked Immunosorbent Assay) 14 第九節 溴化去氧尿苷嵌入分析(BrdU incorporation assay) 14 第十節 軟瓊脂膠非固著依賴性聚落生長測試 (Anchorage-Independent Growth Assays) 15 第十一節 病人檢體 15 第十二節 統計分析 15 表1. 抗體列表 16 表2. 引子序列 17 表3. 蛋白質與基因名稱對照表 18 表4. shRNA序列對照表 19 第肆章 結果 20 第一節 RUNX1 在 BCP-ALL 中為致癌基因的可能性 20 第二節 RUNX1 與 ISX 啟動子片段的結合 21 第三節 RUNX1 對 ISX、幹性及增生分子機制的必要及充分性 22 第四節 ISX 在 RUXN1 促進幹性及增生中的關鍵作用 24 第五節 RUXN1及ISX在BCP-ALL患者檢體中的表現及臨床意義 25 第六節 RUNX1 透過 ISX 調控 LGALS9 表現 27 第伍章 討論 28 第陸章 參考資料 32 圖表 40 圖1 ALL細胞株相較於 LCL 中 RUNX1 及 ISX 蛋白質較多 40 圖2 RUNX1 具有與 ISX 啟動子中-40~0片段結合能力 41 圖3 RUNX1 具有與 ISX 啟動子直接結合能力 42 圖4 RUNX1 促進 ISX mRNA 表現 43 圖5 RUNX1 促進增生基因表現 44 圖6 RUNX1 促進幹性基因表現 45 圖7 RUNX1 促進常見白血病突變基因表現 46 圖8 過表現RUNX1會增加ISX、增生、幹性及免疫逃脫相關蛋白表現 47 圖9 RUNX1對於BCP-ALL細胞表現ISX、LGALS9、增生、幹性、常見白血病突變基因的必要 48 圖10 抑制RUNX1會使ISX、增生、幹性、常見白血病突變蛋白質表現下降49 圖11 抑制RUNX1會使ISX、增生、幹性、常見白血病突變蛋白質表現下降統計圖表 50 圖12 RUNX1 透過 ISX 調控增生基因表現 51 圖13 RUNX1 透過 ISX 調控幹性基因表現 52 圖14 RUNX1 透過 ISX 調控常見白血病突變基因表現 53 圖15 RUNX1 透過 ISX 調控增生、幹性、常見白血病突變蛋白質表現 54 圖16-17 RUNX1 透過 ISX 調控增蛋白質之表現統計圖表 55-56 圖18 ISX 對於 RUNX1 加速 BCP-ALL 細胞株增生的必要 57 圖19 ISX 對於 RUNX1 提升 REH 惡性程度的必要性 58 圖20 ISX 對於 RUNX1 提升 Sup-B15 惡性程度的必要性 59 圖21 急性淋巴性白血病病人檢體中 RUNX1 與 ISX 呈高度正相關 60 圖22 高表現 RUNX1病人預後較差 61 圖23 高表現 ISX 病人預後較差 62 圖24 RUNX1 促進 LGALS9 基因表現 63 圖25 RUNX1 對於 BCP-ALL 細胞 LGALS9 基因的必要 64 圖26 RUNX1 透過 ISX 調控 LGALS9 表現 65 圖27 過表現 RUNX1 提升分泌 Galectin-9 到胞外的能力 66 附錄 67

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