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研究生: 王存多
Wang, Tsun-To
論文名稱: 以邏輯閘及緩衝終結子強化苯乙胺全細胞生物感測器並發展苯乙胺生物感測器的延伸應用
Enhancing Whole-Cell Biosensors with Logic Gates and Buffer Terminators for Phenylethylamine Detection and Extended Applications
指導教授: 葉怡均
Yeh, Yi-Chun
口試委員: 葉怡均
Yeh, Yi-Chun
陳頌方
Chen, Sung-Fang
蔡伸隆
Tsai, Shen-Long
口試日期: 2024/06/20
學位類別: 碩士
Master
系所名稱: 化學系
Department of Chemistry
論文出版年: 2024
畢業學年度: 112
語文別: 中文
論文頁數: 138
中文關鍵詞: 苯乙胺生物感測器邏輯閘緩衝終結子水凝膠
英文關鍵詞: Phenylethylamine Whole-cell Biosensor, And Gate, Buffer terminator, Hydrogel
研究方法: 實驗設計法
DOI URL: http://doi.org/10.6345/NTNU202401120
論文種類: 學術論文
相關次數: 點閱:43下載:0
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  • 苯乙胺為一種神經傳導物質於腦中扮演重要的角色,苯乙胺又為許多藥物、神經傳導物質的基本單元,因此顯現檢測苯乙胺的重要性。先前研究中,透過在大腸桿菌邏輯閘系統來提高傳感器對PEA的特異性。然而PtynA啟動子的洩漏表達問題導致苯乙酸對傳感器的干擾,因此在本篇的研究中,測試不同的終止子以解決啟動子洩漏表達問題。最終PEA生物傳感器的動態範圍為1 µM到400 µM,線性範圍在50 µM到400 µM之間,偵測極限到達1.86 µM。另外也發展了水凝膠封裝細菌的系統,優化了兩種水凝膠:海藻酸-丙烯醯胺、海藻酸-聚合離胺酸水凝膠,針對培養條件、製備條件進行優化並發現使用0.25倍M9培養基製備的海藻酸-聚合離胺酸水凝膠在1倍的M9培養基下培養16小時能夠得到最好的結果,同時我們也將最優化菌株YCY_1644封裝進水凝膠可以看到與空白實驗明顯差別的螢光結果,開發出可以用於實驗室所有生物感測器的水凝膠,以達到全細胞生物感測器臨場檢測以及可攜性的價值。此外我們針對大腸桿菌MG1655染色體中對於苯乙胺調控的相關基因feaR、feaB以及tynA進行基因剔除,並發展螢光探針para-methoxy-2-amino benzamidoxime ( PMA )期許未來能夠進行安非他命以及篩選TynA蛋白突變體之應用。

    Phenylethylamine (PEA) is a neurotransmitter that plays an important role in the brain and serves as a basic unit for many drugs and neurotransmitters, highlighting the significance of detecting PEA. Previous research enhanced the specificity of PEA sensors using a logic gate system in Escherichia coli. However, the issue of promoter leakage from the PtynA led to interference from phenylacetic acid on the sensor. Therefore, this study tested different terminators to address the problem of promoter leakage. Ultimately, the dynamic range of the PEA biosensor was 1 µM to 400 µM, with a linear range between 50 µM and 400 µM and Limit of Detection ( LOD ) reaching 1.86 µM. Additionally, a system for encapsulating bacteria in hydrogels was developed, optimizing two types of hydrogels: alginate-acrylamide and alginate-poly-lysine hydrogels. Optimization of culture and preparation conditions revealed that using alginate-poly-lysine hydrogel prepared with 0.25x M9 medium and cultured in 1x M9 medium for 16 hours yielded the best results. Furthermore, encapsulating the optimized strain YCY_1644 in the hydrogel produced significant fluorescent results compared to blank experiments. This development of a hydrogel suitable for all laboratory biosensors aims to achieve on-site detection and portability for whole-cell biosensors. Additionally, genes related to PEA regulation in the Escherichia coli MG1655 chromosome, including feaR, feaB, and tynA, were deleted, and a fluorescent probe, para-methoxy-2-amino benzamidoxime (PMA), was developed, aiming for future applications in amphetamine detection and TynA protein mutant screening

    Chapter 1 Introduction 1 1-1 苯乙胺 ( phenylethylamine) 1 1-2 常見檢測苯乙胺的方法 5 1-2.1 高效能液相層析法 ( High Performance Liquid Chromatography , HPLC ) 5 1-2.2 氣相層析法 ( Gas Chromatography ) 6 1-2.3 電化學法 ( Electrochemistry ) 7 1-2.4 酵素結合免疫吸附分析法 ( Enzyme-linked immunosorbent assay , ELISA ) 8 1-3 全細胞生物感測器 ( Whole-Cell Biosensor ) 10 1-4 邏輯閘 (Logic gates ) 12 1-5 調控系統與雙質體系統的設計 14 1-5.1 苯乙胺的調控系統與啟動子PtynA 15 1-5.2 苯乙酸的調控系統與啟動子PpaaA 16 1-6 全細胞生物感測器之AND gate系統的建立與重組螢光蛋白片段sfCherry3C ( 1-10 ) & sfCherry3C ( 11 ) 18 1-7 融合蛋白SpyTag/Catcher 23 1-8 細菌封裝至水凝膠 24 Chapter 2 Material and Method 26 2-1 2-1實驗藥品與實驗儀器 26 2-1.1 實驗藥品 26 2-1.2 實驗儀器 28 2-2 菌株以及質體建構 29 2-3 全細胞生物感測器螢光實驗的測定 29 2-4 大腸桿菌MG1655基因剔除 30 2-5 細菌封裝至水凝膠 33 2-5.1 海藻酸-丙烯醯胺水凝膠的製備 33 2-5.2 海藻酸-丙烯醯胺水凝膠的培養與螢光實驗 34 2-5.3 海藻酸-幾丁質以及聚合離胺酸水凝膠的製備 35 2-5.4 海藻酸-幾丁質與聚合離胺酸的培養與螢光實驗 36 Chapter 3 Result & Discussion 37 3-1 苯乙胺生物感測器之質體設計 37 3-2 全細胞生物感測器的優化 41 3-2.1 重組螢光蛋白與融合蛋白基因排列的優化 41 3-2.2 報導基因中連接子 ( linker ) 的優化 45 3-2.3 啟動子以及感測時間優化 49 3-2.4 洩漏表達與緩衝終結子 ( Buffer Terminator ) 51 3-2.5 緩衝終結子於全細胞生物感測器的應用 55 3-3 最優化菌株YCY_1644感測表現與選擇性測試 59 3-4 苯乙胺感測器的延伸應用 62 3-4.1 feaR、feaB以及tynA的基因剔除 62 3-4.2 基因剔除菌株於苯乙胺感測器的應用 66 3-4.3 para-methoxy-2-amino benzamidoxime ( PMA )探針於TynA蛋白質突變體篩選的應用 67 3-4.4 將全細胞生物感測器封裝至水凝膠之應用 72 Chapter 4 Conclusion and Future work 86 4-1 苯乙胺全細胞生物感測器 86 4-2 TynA蛋白質突變與PMA螢光探針的開發 87 4-3 水凝膠材料的開發用於封裝全細胞生物感測器 88 Chapter 5 附錄 91 5-1 引子、質體、菌種以及菌株建構的過程與方法 91 5-1.1 引子 91 5-1.2 質體 93 5-1.3 菌種 99 5-1.4 本篇建構質體的過程 108 5-2 基因剔除實驗詳細步驟與結果 120 5-3 螢光探針para-methoxy-2-amino benzamidoxime ( PMA ) 125 5-3.1 para-methoxy-2-amino benzamidoxime ( PMA )的製備 125 5-3.2 螢光探針PMA的鑑定 126 5-4 製備水凝膠相關溶液配置配方 127 Chapter 6 Reference 130

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